Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03118 ATGATGGTGTTGGTGAATTCTAGTAATACAGGTTTAAGAAAACAAGTATTTCCAATTGATTACGAAACAGAAATGTCACAGTGTCTCGTAGATGCTGTTCATCACGGTGAAACAGATATTGCCATTCAATATCTATTGAATCCTTCGGTTGATGTTAACTTCATTGGAACAGTGTTGTTGAAATCCAAAACCACAGAGATTGTTCTTCAAGATGAGTTACCTCACCGAGTTCACTCGGTTTATCAAGAGTTTAAAACTGAGGTTACTGCTCTTTTTTTGGCTGCACATTCTGGAAATTTCATACTCATTCGTAAACTACTGAATGTGGGAGCTAATGTAAATGTGAGATTGTTCCGAGGCTATGCTACAACAGCAGCAGTGAGGGAAGGACATTTGAAAGTATTGGAGGTTCTTATCAACGGTGGAGCGTCACAACTTGCATGTGAAGAAGCTTTACTTGAAGCAAGCTACGTAGGACGGGCCACATTTGCTGAACTACTGATGCAGTCCAGCATGGTCCGTCCTCACGTTGCAATTCATGCCCTTGTCTCTTCTTGTTGCAGAGGCTTCATTGAGGTTGTCGATGTACTCATCAAGCATGGAGTGGATATCAATGCAATGGATAGGACTCTACTTCAATCTTCAAAGCCATTTCTTCACGCTAATGTTGATTGCAATGCATTATTTGCTGCTGTGGTCAGCAGGCAGATTAATGTTGTTAGACTATTGTTGCAGGCTGGTGTAAGACTAGATATCAAGGTGAAATTGGGAGCTTGGTCTTGGGAAACAGATATAGGAGAAGAATTTCGAGTCGGTGTTGGACTAGCCGAGCCTTATCCAATCACATGGTGTGCTGTAGAATATTTTGAATCCACCGGAACTATACTCCATATGCTTCTCCAACACCTCTCACCTAATAGTTTCCACATCGGAAGAACTCTCTTGCACCACACCGTTGTTTGTAACAACGAAAGAGCATTGAATATACTTCTCAATAATGGTGTGGATACAGAATTAGTACTTCAAACTACTGAAGAAACCAATGTACACCCTATTCACATGGCTGCGCGACTTGGATCATGTAACATTCTTCAGTCTTTGATTGACGGTAAGTGTAACTTGGACTCACAAACAAAATTTGGTGACACAGCATTGATGATTTGTACAAGGTATAAAAATGAGAAGTGTCTAAGAGTTTTAGTATCTTCGGGAGCTGATTTGGGGATTGTAAATTCGTCCGGTCAATGTGCAACTTCATTAGCAAATTTTGTTCAGTGGAGTAAAGAATATCAAAGAGCAATTTTGGATATCATTAGAGGCGGAAAAGTTGTTAAATCAAGCAATGCGTGTGGATTTTCAGCTTTGTTATTCGTCACTGGCGCGAATGACATAGAAGCTTTGAAAAAACTCATTGAAAATAAAAACATAAATCTAGATGAACAAAATGGGAATGGATTTTCAGCTGCAATGGTAGCTTGTGCAGGGGGTAATGTGGAAGCTTTCAAGTTGCTTCTTTATGCTGGAGCTGATGTAATTAATCTGAAAAACAAATATGGTTTAACAGCTCTTAATCTCATAGACTTGAACCAAAAAGGTGAAAATGGCGAAAAATTCCATAAGGTGATGTTTGACTATGCACTTCAAAAAGGATGCAATGTTGTTACTTTAGCCGAGGCGAATCCTCTTCACCGTGCAGCTTGTTATGGAGACATAAACATTGTTGAAAAATTATTAAAACAAGGGTATTATGATGTGAATGGTTTTGATAGAAATGGATATACACCATTGATGTTAGCAGCAAGAGAAAATAAAGGAGAAATGTGTGAGATTTTGATATCTTACGGAGCGAAATGCGATATTGAGAATGAAAAACATGAAACAGCACTTTTACTTGCAAGAAAAAATGGTAAAGGAAATGATGCAGAGAGTGTGATAATAGATGAGTTAGCTAGAAGAGTAGTGTTGTGTGGTGCACGTGTGAAGAAACATACAAAATGTGGTAAAGGGTTACCACATAGGAAACAATTGGTAATGGTTGGTGCTGCTGGAATCTTACGTTGGGGGAAATCAAATAAGAGAAATGTTGTTTGTAAAGTGGCTGAGGTTGGACCAAGTGAAAGATTTCGATGGAACCGTCGAAAGAAGTTTGATGTTGATGAACAGGGAATGTTTTATGTTGTTACTGCTAAAAATAAGGAGGTGCATTTTGTTTGTGAAGGTGGGGTTGAAATGGCTGAGTTATGGGTTAGGGGGATTAGATTAGTAACAAGAGAAGCTATTTTTGGTTCTAGAGCTAATACTGGTTAA 2307 0.3879 MMVLVNSSNTGLRKQVFPIDYETEMSQCLVDAVHHGETDIAIQYLLNPSVDVNFIGTVLLKSKTTEIVLQDELPHRVHSVYQEFKTEVTALFLAAHSGNFILIRKLLNVGANVNVRLFRGYATTAAVREGHLKVLEVLINGGASQLACEEALLEASYVGRATFAELLMQSSMVRPHVAIHALVSSCCRGFIEVVDVLIKHGVDINAMDRTLLQSSKPFLHANVDCNALFAAVVSRQINVVRLLLQAGVRLDIKVKLGAWSWETDIGEEFRVGVGLAEPYPITWCAVEYFESTGTILHMLLQHLSPNSFHIGRTLLHHTVVCNNERALNILLNNGVDTELVLQTTEETNVHPIHMAARLGSCNILQSLIDGKCNLDSQTKFGDTALMICTRYKNEKCLRVLVSSGADLGIVNSSGQCATSLANFVQWSKEYQRAILDIIRGGKVVKSSNACGFSALLFVTGANDIEALKKLIENKNINLDEQNGNGFSAAMVACAGGNVEAFKLLLYAGADVINLKNKYGLTALNLIDLNQKGENGEKFHKVMFDYALQKGCNVVTLAEANPLHRAACYGDINIVEKLLKQGYYDVNGFDRNGYTPLMLAARENKGEMCEILISYGAKCDIENEKHETALLLARKNGKGNDAESVIIDELARRVVLCGARVKKHTKCGKGLPHRKQLVMVGAAGILRWGKSNKRNVVCKVAEVGPSERFRWNRRKKFDVDEQGMFYVVTAKNKEVHFVCEGGVEMAELWVRGIRLVTREAIFGSRANTG 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03118 768 ProSiteProfiles Ankyrin repeat profile. 591 623 IPR002110 GO:0005515
Trre5g03118 768 Gene3D - 426 530 IPR036770 -
Trre5g03118 768 Gene3D - 154 263 IPR036770 -
Trre5g03118 768 Gene3D - 531 668 IPR036770 -
Trre5g03118 768 ProSiteProfiles Ankyrin repeat profile. 380 412 IPR002110 GO:0005515
Trre5g03118 768 ProSiteProfiles Ankyrin repeat profile. 484 516 IPR002110 GO:0005515
Trre5g03118 768 ProSiteProfiles Ankyrin repeat region circular profile. 591 623 - -
Trre5g03118 768 SUPERFAMILY PH domain-like 652 755 - -
Trre5g03118 768 SMART ANK_2a 310 339 IPR002110 GO:0005515
Trre5g03118 768 SMART ANK_2a 380 409 IPR002110 GO:0005515
Trre5g03118 768 SMART ANK_2a 484 514 IPR002110 GO:0005515
Trre5g03118 768 SMART ANK_2a 557 587 IPR002110 GO:0005515
Trre5g03118 768 SMART ANK_2a 591 620 IPR002110 GO:0005515
Trre5g03118 768 SMART ANK_2a 118 147 IPR002110 GO:0005515
Trre5g03118 768 SMART ANK_2a 347 376 IPR002110 GO:0005515
Trre5g03118 768 SMART ANK_2a 177 206 IPR002110 GO:0005515
Trre5g03118 768 SMART ANK_2a 450 478 IPR002110 GO:0005515
Trre5g03118 768 SMART ANK_2a 86 115 IPR002110 GO:0005515
Trre5g03118 768 SMART ANK_2a 223 252 IPR002110 GO:0005515
Trre5g03118 768 Gene3D - 18 153 IPR036770 -
Trre5g03118 768 PANTHER ANKYRIN REPEAT-CONTAINING 18 749 - -
Trre5g03118 768 ProSiteProfiles Ankyrin repeat region circular profile. 484 511 - -
Trre5g03118 768 ProSiteProfiles Ankyrin repeat profile. 557 581 IPR002110 GO:0005515
Trre5g03118 768 ProSiteProfiles Ankyrin repeat region circular profile. 557 581 - -
Trre5g03118 768 Pfam Ankyrin repeats (many copies) 461 505 IPR002110 GO:0005515
Trre5g03118 768 SUPERFAMILY Ankyrin repeat 85 633 IPR036770 -
Trre5g03118 768 ProSiteProfiles Ankyrin repeat region circular profile. 86 116 - -
Trre5g03118 768 Coils Coil 461 484 - -
Trre5g03118 768 ProSiteProfiles Ankyrin repeat profile. 86 118 IPR002110 GO:0005515
Trre5g03118 768 Gene3D - 280 425 IPR036770 -
Trre5g03118 768 SUPERFAMILY Ankyrin repeat 28 257 IPR036770 -
Trre5g03118 768 Pfam Ankyrin repeats (3 copies) 349 409 IPR002110 GO:0005515
Trre5g03118 768 Pfam Ankyrin repeats (3 copies) 542 621 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03118 Trre-Chr5 26516509 26521342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03118 336 522 Ion Channels AT4G32500 28.723 1.29e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03118 - - mtr:11444172 1326.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03118 5 26516509 26521342 Trre5g03118 5 26516509 26521342 ECH