Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03107 ATGTGCTTTTGTACACTCATGACTACCTCTTCTTCAATTGCTGGTTCTTTCACTTTACAAAGTAGAGAAGCAAGTGCTTTGTTGGAGTGGAAATCAAGTCTTGACAACCAAAGCCAAACCTTACTATCTTCATGGAATGGCAATAATTCATGCAACAACTGGCTTGGAATTGCATGTGATGAAGATTTAATATATGTTACTAATGTAAATCTCACAAACATGGGATTGAAAGGTACACTAAAAAGTCTTAACTTCACATCACTTCCAAACATTCTTACTCTTAATCTTAGTCACAATCTTTTCTTAGGAACAATTCCATATGAAATAACACATTTGACCAGTCTTCAACTTTTAGATTTGTCTTTTAATTTTCTTAATGGTATCATTCCTAAAGAAATAGGTTCATTAAGGAATCTAATAAATTTATTTCTTAATGCAAATAACCTTTGTGGATGTATTCCTAAGGAATTTGGAAAGTTATTGAACTTAGGATATCTATTTCTTAGTCAGAATAACCTTTCTGGGTCTATTCCTCAAGAAATAGGGAAATTAGCAAACTTAAAATTTCTAATTCTTCATCTCAATAACCTTTCTGGAACTATTCCTCGAGAATTTGGCAAGTTATTGAAATTAGAGTATCTAATTCTTAAAGGTAATATTCTTTCTGGCTCCGTTCCTACCGAAATCGGAATGATGAGATCTTTGGTTGACATTGATTTGTCATATAATACTTTCTCTGGTAAAGTCCCACCTTCAATTGGAAACTTGAGCAATGTACAAATTCTTCACATTGAAGAAAACCATCTAAGTGGGACAATTCCGACAGGATTGAGTTTGCTTGCTAATATGAAAGTACTCTTTGTATATCATAACAATTTCATTGGTGAGTTGCCTCATAACATTTGCTTTAGTGGGAACTTGACATCCATTATTGCTTCAAATAACCATTTTACTGGCCAAGTTCTAAAGAGTTTGAAGAATTGTTCAAATCTTATTAGACTTAGTCTTGATCACAACCATTTTGATGGAAACATAACAGATGATTTTGGTGTATATCCAAATTTGAAGTTCATGGAATTGGGTGACAATAATTTTTATGGCCACCTTCCATCCAACTGGGGAAAGTTTCATAACTTGACACAACTTCACATCTCCAAAAATAATATATCGGGTTGTATACCACCCGAACTCGGTGAAGCACCTAGCCTGTATTCAATTGACTTATCTTCAAACCATCTTACAGGAAATATTCCAAAGGAGTTAGGCAATTTGACTATGTTGGGCAAACTTTTTTTATCGAACAACCATCTTTCTGGTATTTTTCATCCACAAATATCATCGTTAAATGGACTTGAAACCTTAGATGTTGCATCAAATAATCTAAGCGGATTCCTCCCAAAAGAACTTGCCAAATTGCCTAACTTATGGAACTTAAATTTGAGCCATAATAAATTCAAAGGAAATATTCCTGTTGATTTTGGAAATTTTAAAAAACTTCTATTTCTTGATCTTAGTGGAAATTTTTTGAATGGAACCATACCACTAATGCTTGGAAAGCTGCAACTCTTAGAAACATTGAATATTTCACATAACAATCTTTCTGGATTTATCCCCTCTTCCTTGGATCAAATGATTAGTTTGTGGTTGGTTGACATATCATATAACCAGTTGATGGGTGCACTTCCAAATACGCGAGCATTCAATAACGCTACTTTTGAAGTGTTGAGAAATAATGCAGGCTTGTGCGGTAATGTTTCTGGCTTGAAGCCTTGCATAAAACCAACCAGTGGATCTCATAATAATGTGATTAAGAAAGTGATATTTTTCATAGTTTTACCTCTAGCACTAGGAACTCTAATGCTAGCGATTGTTTGTTTCAAATTTTCGTATTGTTTCTGCCATTCGTCAATCACAAGAGAAAACCAGGACGGAGGAAACATCATTGCTCCTAAAAATGTATTTACAATATGGAGTTTTGATGGAAAAATGGTGTATGAGAACATTATTGAAGCCACAGAAGATTTTGATGACAAAAATCTCGTTGGGGAAGGAGCGTATGGAAGTGTTTACAAAGCAGAGTTGCAGACAGGTCAGGTAGTTGCTGTTAAAAAACTCCATTTAGTAGCAGATACAGAGAACCCCAATCTAAAATCATTCACAAATGAGATCCAAGCTCTAACAGAAATTCGGCATCGCAACATTGTGAAGTTATATGGATTTTGTTCACATTCACACTTATCGTTTTTGGTTTACGAGTTCATGGAGAAAGGTAGTTTGGAAAAGATTTTGAAAGATGATGATGAAGCAATTGCATTTGATTGGAATAAGAGGGCAAATGCCATTAAAGATGTAGCTAATGCTTTATGCTATATGCACCATGATTGCTCTCCTCCGATTGTTCATCGAGATATATCAAGCAAGAATATTCTTTTGGATTTAGAATATGTGGCTCATGTCTCCGACTTTGGAACGGCTAAGCATCTTAATCTTAATTCATCCAATTGGACCTCTTTTGCAGGCACATTTGGATATGGACTAATTAATTATGATATTACACATTTGTAA 2565 0.3442 MCFCTLMTTSSSIAGSFTLQSREASALLEWKSSLDNQSQTLLSSWNGNNSCNNWLGIACDEDLIYVTNVNLTNMGLKGTLKSLNFTSLPNILTLNLSHNLFLGTIPYEITHLTSLQLLDLSFNFLNGIIPKEIGSLRNLINLFLNANNLCGCIPKEFGKLLNLGYLFLSQNNLSGSIPQEIGKLANLKFLILHLNNLSGTIPREFGKLLKLEYLILKGNILSGSVPTEIGMMRSLVDIDLSYNTFSGKVPPSIGNLSNVQILHIEENHLSGTIPTGLSLLANMKVLFVYHNNFIGELPHNICFSGNLTSIIASNNHFTGQVLKSLKNCSNLIRLSLDHNHFDGNITDDFGVYPNLKFMELGDNNFYGHLPSNWGKFHNLTQLHISKNNISGCIPPELGEAPSLYSIDLSSNHLTGNIPKELGNLTMLGKLFLSNNHLSGIFHPQISSLNGLETLDVASNNLSGFLPKELAKLPNLWNLNLSHNKFKGNIPVDFGNFKKLLFLDLSGNFLNGTIPLMLGKLQLLETLNISHNNLSGFIPSSLDQMISLWLVDISYNQLMGALPNTRAFNNATFEVLRNNAGLCGNVSGLKPCIKPTSGSHNNVIKKVIFFIVLPLALGTLMLAIVCFKFSYCFCHSSITRENQDGGNIIAPKNVFTIWSFDGKMVYENIIEATEDFDDKNLVGEGAYGSVYKAELQTGQVVAVKKLHLVADTENPNLKSFTNEIQALTEIRHRNIVKLYGFCSHSHLSFLVYEFMEKGSLEKILKDDDEAIAFDWNKRANAIKDVANALCYMHHDCSPPIVHRDISSKNILLDLEYVAHVSDFGTAKHLNLNSSNWTSFAGTFGYGLINYDITHL 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03107 854 FunFam Nuclear pore complex protein NUP107 20 169 - -
Trre5g03107 854 Gene3D Phosphorylase Kinase; domain 1 646 753 - -
Trre5g03107 854 SMART LRR_typ_2 448 471 IPR003591 -
Trre5g03107 854 SMART LRR_typ_2 424 443 IPR003591 -
Trre5g03107 854 SMART LRR_typ_2 472 495 IPR003591 -
Trre5g03107 854 SMART LRR_typ_2 256 280 IPR003591 -
Trre5g03107 854 SMART LRR_typ_2 160 184 IPR003591 -
Trre5g03107 854 SMART LRR_typ_2 112 136 IPR003591 -
Trre5g03107 854 SMART LRR_typ_2 520 543 IPR003591 -
Trre5g03107 854 SMART LRR_typ_2 376 400 IPR003591 -
Trre5g03107 854 ProSitePatterns Tyrosine protein kinases specific active-site signature. 799 811 IPR008266 GO:0004672|GO:0006468
Trre5g03107 854 Gene3D Ribonuclease Inhibitor 282 599 IPR032675 -
Trre5g03107 854 PANTHER LEUCINE RICH REPEAT KINASE 2 233 844 - -
Trre5g03107 854 SUPERFAMILY Protein kinase-like (PK-like) 655 844 IPR011009 -
Trre5g03107 854 FunFam Leucine-rich repeat receptor protein kinase EMS1 177 276 - -
Trre5g03107 854 Gene3D Transferase(Phosphotransferase) domain 1 754 846 - -
Trre5g03107 854 SUPERFAMILY L domain-like 325 583 - -
Trre5g03107 854 Pfam Protein kinase domain 676 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03107 854 ProSitePatterns Protein kinases ATP-binding region signature. 681 704 IPR017441 GO:0005524
Trre5g03107 854 Gene3D Ribonuclease Inhibitor 178 279 IPR032675 -
Trre5g03107 854 FunFam Leucine-rich repeat receptor protein kinase MSP1 638 753 - -
Trre5g03107 854 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 280 595 - -
Trre5g03107 854 Gene3D Ribonuclease Inhibitor 20 177 IPR032675 -
Trre5g03107 854 SUPERFAMILY L domain-like 59 343 - -
Trre5g03107 854 ProSiteProfiles Protein kinase domain profile. 675 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03107 854 Pfam Leucine rich repeat 427 485 IPR001611 GO:0005515
Trre5g03107 854 Pfam Leucine rich repeat N-terminal domain 22 60 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03107 Trre-Chr5 26311342 26313906 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03107 10 844 Receptor kinase-like Gene Family AT4G08850 42.593 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre5g03107 Pkinase 3.7e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03107 - - tpra:123888271 1257.66