Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03097 ATGGTGAAGTACTCCAGAGAACCCGATAATCCCACCAAATCCACCAAAGCAAGAGGTGCTGACCTTAGGGTGCATTTCAAGAACACCAGGGAAACAGCGTTTTCCATCAGGAAGATGCCCTTGATCAAAGCCAAAAGATACTTGGAAGATGTTTTGGCCCACAAACAGGCTATTCCCTTTAGACGTTTCTGTCGTGGTGTTGGCAGGACTGCACAAGCTAAGAATGCTGGACATTCCAATGGGCAAGGACGCTGGCCCGCTAAGTCAGCTAAATTCATTCTGGATTTGCTCAAGAATGCTGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTGGATGCTCTCTATGTTTCTCATATCCAGGTGAATCAAGCTCAAAAGCAAAGACGCCGTACCTACAGGGCTCATGGAAGAATCAATCCCTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCCGAGAAAGAAGAGGCTGTCCAGAAAGAGCCCGAGACCCAGTTGGCAACAAACAAGAAGAAGTCTCAAGCTCTTCGAAGTGGCGCTTCATCCTAA 552 0.4692 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFSIRKMPLIKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNAGHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEAVQKEPETQLATNKKKSQALRSGASS 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03097 183 Hamap 50S ribosomal protein L22 [rplV]. 2 155 IPR005721 GO:0003735|GO:0006412|GO:0015934
Trre5g03097 183 PANTHER 60S RIBOSOMAL PROTEIN L17 1 176 IPR005721 GO:0003735|GO:0006412|GO:0015934
Trre5g03097 183 CDD Ribosomal_L22 16 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Trre5g03097 183 Pfam Ribosomal protein L22p/L17e 17 153 IPR001063 GO:0003735|GO:0005840|GO:0006412
Trre5g03097 183 MobiDBLite consensus disorder prediction 159 183 - -
Trre5g03097 183 FunFam 60S ribosomal protein L17 1 176 - -
Trre5g03097 183 Gene3D Ribosomal protein L22/L17 1 182 IPR036394 GO:0003735|GO:0005840|GO:0006412
Trre5g03097 183 MobiDBLite consensus disorder prediction 169 183 - -
Trre5g03097 183 ProSitePatterns Ribosomal protein L22 signature. 128 152 IPR018260 GO:0003735|GO:0005840|GO:0006412
Trre5g03097 183 NCBIfam 50S ribosomal protein L22 4 155 IPR005721 GO:0003735|GO:0006412|GO:0015934
Trre5g03097 183 SUPERFAMILY Ribosomal protein L22 1 155 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03097 Trre-Chr5 26142484 26144104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03097 1 183 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 84.699 2.23e-112 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03097 K02880 - cave:132179320 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03097 5 26142484 26144104 Trre7g04522 7 53223003 53225939 PCT