Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03086 ATGGTTATGGTTATGGCGGAGGAAGAAGAGAACGCGTTATCGATGGAACCAGAATTTCCGAAGAGTCGAGTGAAGAAGATAATGACTCTAGATGAAGACGTGAAGAGAGTGAGTTCAGAAGCGTTGTTCTTGGTGTCGAAATCTACGGAGCTTTTTTTACAGTTACTTGCTGAAAAATCTGCGGAAGTTGTAATTGAGAAGAAACGCAAGACGGTGAAGCTTGAACACATGAGAATCGCGGTGAAGAGAAACCGTCCGATAAGTGATTTTCTTCTTGATTCACTTCCGATGCCTTCTGAAACTACCAAATCTGACAAACCGGTGGTGGTTGCTGATCGGCCTAAATCTGTTCCTGTTGGTACTCGCCGTATCGATCAAATTTTCCGTAAGTCAGAAGCCCAAGCCCAAGTTGAAGCTCAAGTTGAAGCCCAAGTTGAAGCCGAAGTAGAAGCTCAAGTTGAAGCCCAAATAGAAGCTGAAATTGAAGCTCAAGCGTCTGAACTGGTGCCCGAACCCATGGAGGAGTCATAG 531 0.4501 MVMVMAEEEENALSMEPEFPKSRVKKIMTLDEDVKRVSSEALFLVSKSTELFLQLLAEKSAEVVIEKKRKTVKLEHMRIAVKRNRPISDFLLDSLPMPSETTKSDKPVVVADRPKSVPVGTRRIDQIFRKSEAQAQVEAQVEAQVEAEVEAQVEAQIEAEIEAQASELVPEPMEES 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03086 176 Gene3D Histone, subunit A 2 97 IPR009072 GO:0046982
Trre5g03086 176 SUPERFAMILY Histone-fold 19 94 IPR009072 GO:0046982
Trre5g03086 176 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 8 136 - -
Trre5g03086 176 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 18 81 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03086 Trre-Chr5 26054890 26055420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03086 7 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 58.140 6.31e-46 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre5g03086 CBFD_NFYB_HMF 3.1e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03086 - - gmx:100790556 176.792
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03086 5 26054890 26055420 Trre5g03086 5 26054890 26055420 ECH