Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03068 ATGGAGTGGAACGCGAAATCTCCCGGACAATGGGACTGGGAAAACTTATTCTTCTTGAATTCAAAGGCAACAGAAAATCACAGGTTACAGTCTACTGATTGGAGTGCGGAGACAGACCGAGATATCAATGTCGGGGTGTTGTTTCCATCAGGTGGTAATGGTTATTCCATGTCGAAACTAGCACACGCTTCATCCTCGAGGAGCTCAAAATCTCCTTCCAATAATTCATCATCAAATGGAGATAGCAAGACCTCTATGTTAACTCAAGAAGGTTCTCAAGGCGATTCCACCGGTAAGAAAGAATTGTCTAAAGGAGATCCAATTGAAACTTCTCCAGCAGCAGAACCATTGCTAACACTAAAGCTTGGTAAAAGATTCTACTTTGAGGATGTTTGCCCTGAAACTCATTCCAAGAAAGCCTCTTCCTCTGCGGTTCCGCTTTCGTGCAAAAAGAAAGGTAAATCGAAAAGTCAGAACTTACTTCATCCAAGCTGCCAGGTTGAAGGCTGTGGCCTTGACCTCTCTTCTGCTAAAGATTACCATAAAAAACATCGTATTTGTGAAAGTCATGCCAAATCACCTATGGTGGTTATAGCTGGTTTACAGCTTCGGTTTTGCCAGCAATGTAGCAGGTTCCATTCTCTGTCAGAATTTGATGATAAAAAAAGAAGCTGCAGACGTCGTCTTTCAGATCACAATGCAAGGCGCCGCAAACCTCAGCCTGAAGCAGTGCAACTGAATCCATCAACTCTGCATTCTTCACCCTATGATCGGAGGCAAATAATGGGCTCGTTCGATTTTTCAAGGAATGCTACAAATTTAGCATGGCAAGGCATACAAAGTAGCAAGCTCCCTCAAACAAAAGATTTTATGCTCAAACCTCCAAAAGCCTTCAACAAGATTGTCACTATGCTTTCTAATGATTCCAATGGCCATCTTGCATCCAAAGGCACAGGATCCAAGAGTACATTTCCAGGTATAGAAGATCAAGCTACCTTGTCTGATCCAAATGCTACACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAACCAATTCATGGGGTGCATACGATACCAAGTCCCTCTCCCTCGATCACTCCAACCGAACAAATGCAATTGCTCAGCGCTCTCCATTTCCGTCATCCGAATACTGGCAAACTGATCAGCAAAACGCCAACTCCAGCACCTGTATCTCGTTCTCAGGTTACGACAATAGCAGTCGCTTTCAAGACTTTCAGCTTTTCAGTGCACCTTTCGAGTCAAGTTTCCCTTGCAACCAGCTGGATTAA 1290 0.438 MEWNAKSPGQWDWENLFFLNSKATENHRLQSTDWSAETDRDINVGVLFPSGGNGYSMSKLAHASSSRSSKSPSNNSSSNGDSKTSMLTQEGSQGDSTGKKELSKGDPIETSPAAEPLLTLKLGKRFYFEDVCPETHSKKASSSAVPLSCKKKGKSKSQNLLHPSCQVEGCGLDLSSAKDYHKKHRICESHAKSPMVVIAGLQLRFCQQCSRFHSLSEFDDKKRSCRRRLSDHNARRRKPQPEAVQLNPSTLHSSPYDRRQIMGSFDFSRNATNLAWQGIQSSKLPQTKDFMLKPPKAFNKIVTMLSNDSNGHLASKGTGSKSTFPGIEDQATLSDPNATQDVNRALSLLSTNSWGAYDTKSLSLDHSNRTNAIAQRSPFPSSEYWQTDQQNANSSTCISFSGYDNSSRFQDFQLFSAPFESSFPCNQLD 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03068 429 MobiDBLite consensus disorder prediction 58 114 - -
Trre5g03068 429 SUPERFAMILY SBT domain 163 244 IPR036893 GO:0003677|GO:0005634
Trre5g03068 429 MobiDBLite consensus disorder prediction 58 96 - -
Trre5g03068 429 MobiDBLite consensus disorder prediction 311 337 - -
Trre5g03068 429 ProSiteProfiles Zinc finger SBP-type profile. 162 239 IPR004333 GO:0003677
Trre5g03068 429 FunFam Squamosa promoter-binding-like protein 14 156 226 - -
Trre5g03068 429 Gene3D - 161 226 IPR036893 GO:0003677|GO:0005634
Trre5g03068 429 MobiDBLite consensus disorder prediction 223 255 - -
Trre5g03068 429 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 60 370 IPR044817 GO:0003677
Trre5g03068 429 Pfam SBP domain 165 238 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03068 Trre-Chr5 25663176 25664983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03068 1 402 SBP-box Gene Family AT5G43270 38.407 1.09e-58 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre5g03068 SBP 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03068 - - mtr:11441057 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03068 5 25663176 25664983 Trre5g03068 5 25663176 25664983 ECH