Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03058 ATGAGTTTGCTACATGTAATTGGTTTTGGTCTAAAAGTTGGGCATCTACTTTTAGTGCTATGTTGTTGGATTGTATCTCTAATTTATATCAACTGGGTTATTAGTATGGACAGTACAAAGATGGGATTTTTAGGAGATAGTGGTAAGATGTGGCTTAAATGGTGGGAAAAGATCTTAGGAATTACTGAGAAAAGGAAAGAAACTTTAGCTAGTATGTGTGATGGAAGAGCTAGGATGTTACAAGATCAGTTTAATGTTAGTATGAATCATATTCAAGCCATGTCTATTCTCATCTCCACTTTTCATCATGCCAAAACTCCTTCTGCCATTGATCAGAAAACTTTTGCAAAGTATACAGAAAGAACTGCTTTTGAGAGACCACTTACACGCGGTGTTGCGTATGCTGTAAGGGTGCTTCAATCTGAAAGAGAACAATTTGAGAAGCAACAAGGGTGGAGTATTAATAGGATGGATACTTTGGAACAGAATCCGGTTCATGAGGATGATTATGTAGCAGATGCATTGGAACCATCCCCTATCCATGAAGAATATGCGCCTGTTATCTTTGCGCAGGATACTATTTCACATGTCATATCTATTGACGTGCTTTCCGGAAAGGAAGACCGTGAAAATGTGTTGCGTGCAAGAGAATCGGGCAAAGGGGTTTTAACCGCTCCTTTCAGGCTGTTGAAAACAAATCGTTTAGGGGTTATCCTCACATTTGCGGTTTACAAGAGAGATCTTCCATCAAATGCTACTCCAAATGAAAGGATTCAAGCTACTGATGGGTATCTTGGTGGAGTGTTTGAAATAGAGTCATTAGTGGAGAAATTGCTTCAGCAACTTGCTAGCAAGCAAACCGTGCTCGTTAATGTATATGATACGACAAATCGCACACATCCGATTCCCATGTATGGCTCTGATGTATCAGGTGATGAGTTCTATCATGTGAGCTTTCTTAACTTTGGAGATCCTTTCAGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCACCATGGCCGTGGATGGCAATAGGTACATCGATTGGAATTCTTGTTATTGCACTCCTTGTTGGACATATATTTCACGCAACTGTGAATCGAATTGCTAATGTAGAGGATGATTTCCAAAAGATGATGGAACTTAAGAAACGAGCCGAAGCAGCTGATGTTGCTAAATCCCAATTTCTTGCTACTGTTTCGCACGAGATCAGAACTCCAATGAATGGTGTTTTAGGGATGATGAATATGCTAATGGACACCGATCTAGATGTAACACAACAAGAATATGTCAGAACAGCACAAGGCAGTGGAAAAGCTCTGGTGTCGATTATAAATGAAGTTTTGGACCAGGCAAAGATTGAATCTGGTAAGCTAGAGCTTGAGGCTGTGCTGTTCGATATACGAGCAATTATGGATGATGTGTTATCGCTATTTTCTGAGAAATCTCAAGGAAAAGGAGTAGAGTTAGCAGTTTACGTCTCGGATCAGGTTCCTCGACAGCTTATAGGTGATCCAGGACGGTTTCGACAAATAATTACGAATCTCATGGGTAACTCAATTAAGTTCACAGACAAAGGGCATATCTTTGTCACTATTCATCTTGTCGAGGAGGTTTTCCATTCGATAGAGGTTGAGAGAGAATCCACTTCAAAAGATACATTGAGTGGTTTCCCAATTGCTGATGGCCGCCGAAGCTGGGAAGGATTCCAAGCTTTCAGTCATGAAGGACCTCTTGGTTCTTTCTCGTCCTCCTCCTCCAATGATTTCATCAATTTGATTGTATCGGTTGAGGATACAGGCGACGGTATTCCTCTAGAGTCTCAGCCGAAAATATTCACTCCATTCATGCAAGTAGGTCCATCTATCTCAAGAAAACATGGGGGAACCGGTATTGGTTTAAGCATTAGCAAGTGTTTGGTTGGCCTTATGAATGGAGAAATCGGATTTGTGAGTGAACCGAAGATCGGAAGCACTTTCACATTTACAGCTGTTTTCACGAACGCATGTCCTAATTCAAACGACTTGAATAAAACTCAGCAAATCAACAACCAACCTCATTCTGCATCCTCAGAGTTTCTCGGTATGGCTGCACTAGTTATTGATCCGAGACCAGTTCGAGCTGAAGTGTCAAGATATCACATCCAAAGGCTCGGCGTTAAAGTTGAAATAGTTTCAGATTTGAAGCAAGGTTTGTCCGCCATAACCGATGGGAACGTAACAATCAATATGGTCCTGATTGAACAAGAGGTTTGGGAAAGAGACTCAACCATGTCATCACACTTTGTGAATAACATTAGGAAAATTGCTGAAGTTGATAAAGGAATTGCTCCAAAACTTTTCATTCTTGTTAATTCTAGTAGTTCTTTTAAAGCTAGTTTTGCGACATCATGTGTTCATAATCCAACGGTCGTCACAAAACCTTTGAGAGCAAGTATGCTAGCTGCTTCGCTACAAAGAGCAATGGGTGTTGGGAACAAAGGGAATCCTCGAAACGGAGAACATCAAGCTTTGTCTCTCAACCATCTTCTCTCGGGGAGAAAAATTCTTATTGTAGATGATAATAGTGTGAATCGCACGGTAGCTGCTGGCGCTTTAAAAAAATATGGAGCTGGTGTGGTCTGTGTAAGCAGTGGAATAGAAGCCATCACTATGCTGACGCCTCCTCACGAGTTTGATGCATGCTTTATGGATATTCAAATGCCTGAAATGGATGGGTTTGAAGCTACAGAGAAAATTCGAATTAATGAAAACAGTCCAAACAATAAAGAATTGTCTGTCCATCTACCGATTTTGGCTATGACCGCAGACGTAATCCAGGCTACGCACGAGCAATGTTTAAAGCATGGAATGGATGGATATGTTTCAAAACCATTTGAAGCTGAACAACTTTATAGAGAGGTTTCAAAGTTTTTCAAATCATCTTGA 2931 0.4077 MSLLHVIGFGLKVGHLLLVLCCWIVSLIYINWVISMDSTKMGFLGDSGKMWLKWWEKILGITEKRKETLASMCDGRARMLQDQFNVSMNHIQAMSILISTFHHAKTPSAIDQKTFAKYTERTAFERPLTRGVAYAVRVLQSEREQFEKQQGWSINRMDTLEQNPVHEDDYVADALEPSPIHEEYAPVIFAQDTISHVISIDVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFEIESLVEKLLQQLASKQTVLVNVYDTTNRTHPIPMYGSDVSGDEFYHVSFLNFGDPFRKHEMHCRFKQKPPWPWMAIGTSIGILVIALLVGHIFHATVNRIANVEDDFQKMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMMNMLMDTDLDVTQQEYVRTAQGSGKALVSIINEVLDQAKIESGKLELEAVLFDIRAIMDDVLSLFSEKSQGKGVELAVYVSDQVPRQLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVFHSIEVERESTSKDTLSGFPIADGRRSWEGFQAFSHEGPLGSFSSSSSNDFINLIVSVEDTGDGIPLESQPKIFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSEPKIGSTFTFTAVFTNACPNSNDLNKTQQINNQPHSASSEFLGMAALVIDPRPVRAEVSRYHIQRLGVKVEIVSDLKQGLSAITDGNVTINMVLIEQEVWERDSTMSSHFVNNIRKIAEVDKGIAPKLFILVNSSSSFKASFATSCVHNPTVVTKPLRASMLAASLQRAMGVGNKGNPRNGEHQALSLNHLLSGRKILIVDDNSVNRTVAAGALKKYGAGVVCVSSGIEAITMLTPPHEFDACFMDIQMPEMDGFEATEKIRINENSPNNKELSVHLPILAMTADVIQATHEQCLKHGMDGYVSKPFEAEQLYREVSKFFKSS 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03058 976 CDD PRTases_typeI 802 877 IPR000836 -
Trre5g03058 976 ProSiteProfiles Histidine kinase domain profile. 400 669 IPR005467 -
Trre5g03058 976 CDD HisKA 393 454 IPR003661 GO:0000155|GO:0007165
Trre5g03058 976 Gene3D - 60 109 - -
Trre5g03058 976 SMART REC_2 848 969 IPR001789 GO:0000160
Trre5g03058 976 Coils Coil 370 390 - -
Trre5g03058 976 CDD HATPase_EvgS-ArcB-TorS-like 510 667 - -
Trre5g03058 976 PRINTS Bacterial sensor protein C-terminal signature 612 622 IPR004358 GO:0016310|GO:0016772
Trre5g03058 976 PRINTS Bacterial sensor protein C-terminal signature 629 647 IPR004358 GO:0016310|GO:0016772
Trre5g03058 976 PRINTS Bacterial sensor protein C-terminal signature 594 608 IPR004358 GO:0016310|GO:0016772
Trre5g03058 976 PRINTS Bacterial sensor protein C-terminal signature 653 666 IPR004358 GO:0016310|GO:0016772
Trre5g03058 976 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 447 664 IPR036890 -
Trre5g03058 976 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 380 459 IPR036097 GO:0000155|GO:0007165
Trre5g03058 976 SMART HisKA_10 393 458 IPR003661 GO:0000155|GO:0007165
Trre5g03058 976 ProSiteProfiles Response regulatory domain profile. 698 823 IPR001789 GO:0000160
Trre5g03058 976 Pfam CHASE domain 109 305 IPR006189 -
Trre5g03058 976 Pfam His Kinase A (phospho-acceptor) domain 393 458 IPR003661 GO:0000155|GO:0007165
Trre5g03058 976 Pfam Response regulator receiver domain 850 968 IPR001789 GO:0000160
Trre5g03058 976 Gene3D - 457 670 IPR036890 -
Trre5g03058 976 Gene3D - 831 974 - -
Trre5g03058 976 SMART HKATPase_4 505 669 IPR003594 -
Trre5g03058 976 ProSiteProfiles CHASE domain profile. 106 332 IPR006189 -
Trre5g03058 976 PANTHER TWO-COMPONENT HISTIDINE KINASE 73 966 - -
Trre5g03058 976 CDD REC_hyHK_CKI1_RcsC-like 850 969 - -
Trre5g03058 976 Gene3D CHASE domain 110 339 IPR042240 -
Trre5g03058 976 SMART CHASE_2 106 307 IPR006189 -
Trre5g03058 976 FunFam Histidine kinase 4 110 339 - -
Trre5g03058 976 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 505 667 IPR003594 -
Trre5g03058 976 FunFam Histidine kinase 4 365 456 - -
Trre5g03058 976 SUPERFAMILY CheY-like 845 972 IPR011006 -
Trre5g03058 976 Gene3D - 361 456 - -
Trre5g03058 976 ProSiteProfiles Response regulatory domain profile. 849 973 IPR001789 GO:0000160
Trre5g03058 976 SUPERFAMILY CheY-like 696 824 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03058 Trre-Chr5 25481716 25486637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03058 1 975 Miscellaneous Gene Families AT1G27320 64.976 0.0 1336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre5g03058 CHASE 4.8e-36 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03058 K14489 - gmx:100776798 1531.92