Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03055 ATGCTACCTGGTTTGCATTACAATATCAATGATCTTTTTCAAGAAGCTAAGAAAAGATGGCTCAAACCTATAGAAGTGTTTTACATTTTGCAGAATCACGATATGTGCGAGTTCACCAATATGCCCCTTAATCGGCCTCGTGGTGGAGCTGTTTATTTGTTTAATAAAAGAGTCATGCGTTTCTTTCGAAAAGATGGTCATAATTGGCGGAAGAAAAAAGACGGAAGAACTGTCGCAGAAGCACATGAACGGCTTAAGGTTGGAAATGTTGAAGCCCTAAACTGTTACTATGCACATGGAGAGGAGAACCGTAGTTTCCAGCGGCGAAGCTATTGGATGTTGAACCCGGAATATGAGCATGTTGTTCTCGTGCATTACAGAGATACAAATGAGGGGACATCCAATTCTGGACCTGCTGCACAGTTGTCACCGTTTAGTCAGAGTCGCAGCTCATATACTACTCAAAACCCCGAGACAACATCCATAGTTGGTGATTCATGTGAACCTAATCAGAATTTCTCCAGTCCTGGGTCCTTAGAAGTCACCTCTGATATAGTCATCATTAATAATGGAATGGATCACTTGGAGAAAACAAATGCACAAGCTTTCCGCCAATTGGAAGAACAATTAAGTTTGAATGACGACAGCTGCACAGAAATATCTCCGTTTTATAGGGAACATGAAGTTCCACAGGAAATATGTGCTGCATTCTCCGGACCAGATGATCAGAAACAACCATACGATGGATATAATAGAACAAAAGATGGCATCTGTAATCATTATCATGAGTTACTTGACCATAGTTACCCTGGTGGGAATGGGAAAACATCATCTTGGACAGAAATGCTGAATTCAAGCAAGTTATCATCTGTGATCAAGTTACCAGAACAACATGCATACAAGGCATTTGAAAATGAAAAGCCATTATCTTCTCCAGGAAGAGAAATGATTGCCAACCAGGAAATCGGTTACTGGCTACACCCCAACAATAATAATGATGAGAATTCTGTATTTTCATTAACTCAACATATTGGTGGAGTCAACATGTCTCCATATTCTTCGGTAGAAACTCAAGGAACTAATTCTGACTACTATGAAAGATTGCTTGACCAAAGCCAAATTCAAGAACCTCTGGATGCATATTCAAGGTTCACTGTTGGACAGAAATTTACGATCACGGCTTTCTCCCCAGAATATTGTTATGCCTCTGAGGCAACAAAGGTGATCATTATTGGATCTTTTCTCTGCCTTCCCATGGATTCTACCTGGGCTTGTATGTTTGGTGATGTTGAAGTTCCTGCTGAAATACTTCAGGATGGCGTAATCTGTTGTGAGGCTCCATCCCATCTTGTTGGAAAGGTTTCTCTGTGCATTACTTCAGGAAATAAGGAACCATGCAGTGAAGTCAAAGAGTTTGAATTTCGTAATAAGACCAATAGTTGCACTCACTGTAATAGTTTGGAAACAGAAGCTGCCCGAAGTCCAGAAGAGCTGTTATTACTTGTTCGATTTGCAGAAATGCTCCTTTCTACTTCAATTATAAAGGATGACAGCACAGAATCTGGAAGCCATCTTTCAACAGAACAGAAAGCAGATGACGATTCATGGAGCCATATTATAGACACTCTCCTAGTTGGCAACGGAACTTCATCTGGTACTATTGATTGGATTCTTCAAGAACTGCTGAAGGATAAGCTGCAGCATTGGCTTTCTTGCAGATCCAATGAACAAGATGAAGGGGCAGGTTGTTCTTTGTCCAAGAAAGAGCAAGGGATTATACACATGGTTTCTGGATTGGATTTTGAGTGGGCCCTAAACCCCATTCTCAGTTGTGGCGTGAATGTTAATTTCCGTGACATCAATGGATGGACTGCCCTTCATTGGGCTGCACGGTTTGGAAGGGAAAAAATGGTTGCATCGCTTATTGCTGCTGGTGCATTTGCTGGAGCAGTGACAGATCCAACTTCACAAGATCCAAATGGTAAAACTGCTGCATCTATTGCGACCAGCAATGGCCACAAGGGACTGGCAGGTTATCTTGCAGAGGCAGATCTAACAAGTCATCTGTCATCCCTCACATTGGAAAAGTGTGAAGCTCCTAAAGATTCTTCTGAGCTTGAAGCAGAGTTAGCTGTCAGCAGCGTGTCTAAGAAAAATCTTGAAGCCAGTGATGATGAGGTTTCACTAAAGAATACCTTGGGTGCTGTCAGAAATGCATCTCTGGCAGCTGCACGAATACAGGCTGCTTTTCGTGCACATTCTTTCAATAAACGGATAGAGAGAGAAGCTGCCTCCGCCACTTGTCTGAATGGATATGTCAAAGGTGTGGGCAGCATTGGTGGATATGCTAGGAGCTTGCGTGATTGCAATTCAGCTGCCTTATCAATTCAGAAGAAGTATCGGGGCTGGAAAGGTCGCAAAGAGTTCTTAGTTTTGCGCCAAAAAGTTGTAAAGATACAGGCTCATGTGAGGGGTTACCAGACTCGGAAGCAGTACAAGGTGGTGATATGGGCAGTTGGAATCTTGGACAAGGTTGTGCTAAGATGGCGGAGAAAACGGGTTGGTTTGCGAAGCTCTCCACAAGAAAATGATTCAAAAGGAGAAAGTGATGATGAGGATTTTCTTAAGGCGTTCAGGCAAGAGAAAGTACATGCACAAATTGAAAAGGCTTTGGCGCGGGTGCGTTCCATGGTCCATTCTGCACATGCTCGTCAGCAATATAATCGCCTGCTTCAGATGTATCGTCAAACCAAGGCTGAAACACTTATATCAACTTCTTTAGAGACTGCTTGGAATATTGAAGAAGATGCAACACTTCTATCAACTTCTTTTGAGACTGCTTGGAATATTGAAGAAGATGAAACACTTTTATCAACTTCTCTAGAGAATGCTTGGAATATTGAAGATGATGGTTTATATCAATTTCCATGGGAAACACTCTAG 2943 0.4207 MLPGLHYNINDLFQEAKKRWLKPIEVFYILQNHDMCEFTNMPLNRPRGGAVYLFNKRVMRFFRKDGHNWRKKKDGRTVAEAHERLKVGNVEALNCYYAHGEENRSFQRRSYWMLNPEYEHVVLVHYRDTNEGTSNSGPAAQLSPFSQSRSSYTTQNPETTSIVGDSCEPNQNFSSPGSLEVTSDIVIINNGMDHLEKTNAQAFRQLEEQLSLNDDSCTEISPFYREHEVPQEICAAFSGPDDQKQPYDGYNRTKDGICNHYHELLDHSYPGGNGKTSSWTEMLNSSKLSSVIKLPEQHAYKAFENEKPLSSPGREMIANQEIGYWLHPNNNNDENSVFSLTQHIGGVNMSPYSSVETQGTNSDYYERLLDQSQIQEPLDAYSRFTVGQKFTITAFSPEYCYASEATKVIIIGSFLCLPMDSTWACMFGDVEVPAEILQDGVICCEAPSHLVGKVSLCITSGNKEPCSEVKEFEFRNKTNSCTHCNSLETEAARSPEELLLLVRFAEMLLSTSIIKDDSTESGSHLSTEQKADDDSWSHIIDTLLVGNGTSSGTIDWILQELLKDKLQHWLSCRSNEQDEGAGCSLSKKEQGIIHMVSGLDFEWALNPILSCGVNVNFRDINGWTALHWAARFGREKMVASLIAAGAFAGAVTDPTSQDPNGKTAASIATSNGHKGLAGYLAEADLTSHLSSLTLEKCEAPKDSSELEAELAVSSVSKKNLEASDDEVSLKNTLGAVRNASLAAARIQAAFRAHSFNKRIEREAASATCLNGYVKGVGSIGGYARSLRDCNSAALSIQKKYRGWKGRKEFLVLRQKVVKIQAHVRGYQTRKQYKVVIWAVGILDKVVLRWRRKRVGLRSSPQENDSKGESDDEDFLKAFRQEKVHAQIEKALARVRSMVHSAHARQQYNRLLQMYRQTKAETLISTSLETAWNIEEDATLLSTSFETAWNIEEDETLLSTSLENAWNIEDDGLYQFPWETL 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03055 980 Gene3D - 559 691 IPR036770 -
Trre5g03055 980 ProSiteProfiles Ankyrin repeat profile. 621 653 IPR002110 GO:0005515
Trre5g03055 980 Gene3D - 789 835 - -
Trre5g03055 980 Pfam Ankyrin repeats (3 copies) 607 685 IPR002110 GO:0005515
Trre5g03055 980 SMART CG_1_2 12 130 IPR005559 GO:0003677
Trre5g03055 980 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Trre5g03055 980 Pfam IQ calmodulin-binding motif 791 809 IPR000048 GO:0005515
Trre5g03055 980 Pfam IQ calmodulin-binding motif 814 833 IPR000048 GO:0005515
Trre5g03055 980 MobiDBLite consensus disorder prediction 132 175 - -
Trre5g03055 980 SUPERFAMILY Ankyrin repeat 593 683 IPR036770 -
Trre5g03055 980 ProSiteProfiles Ankyrin repeat region circular profile. 621 646 - -
Trre5g03055 980 FunFam Calmodulin-binding transcription activator 4 isoform A 501 686 - -
Trre5g03055 980 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 742 839 IPR027417 -
Trre5g03055 980 FunFam Calmodulin-binding transcription activator 2 788 836 - -
Trre5g03055 980 Pfam IPT/TIG domain 391 467 IPR002909 -
Trre5g03055 980 SUPERFAMILY E set domains 391 475 IPR014756 -
Trre5g03055 980 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 920 - -
Trre5g03055 980 SMART ANK_2a 660 689 IPR002110 GO:0005515
Trre5g03055 980 SMART ANK_2a 621 653 IPR002110 GO:0005515
Trre5g03055 980 Gene3D Immunoglobulins 385 480 IPR013783 -
Trre5g03055 980 ProSiteProfiles IQ motif profile. 790 818 IPR000048 GO:0005515
Trre5g03055 980 SMART iq_5 811 833 IPR000048 GO:0005515
Trre5g03055 980 SMART iq_5 738 760 IPR000048 GO:0005515
Trre5g03055 980 SMART iq_5 788 810 IPR000048 GO:0005515
Trre5g03055 980 ProSiteProfiles IQ motif profile. 812 836 IPR000048 GO:0005515
Trre5g03055 980 ProSiteProfiles IQ motif profile. 739 767 IPR000048 GO:0005515
Trre5g03055 980 CDD IPT 391 475 - -
Trre5g03055 980 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03055 Trre-Chr5 25458264 25467732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03055 5 920 CAMTA Transcription Factor Family AT1G67310 49.385 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Trre5g03055 CG-1 2.5e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03055 K21596 - gmx:100791430 1241.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03055 5 25458264 25467732 Trre7g04540 7 53414703 53422031 PCT