Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03051 ATGGGAAGAGGAAGAGTTGAATTGAAGAGAATTGAGAACAAAATCAACAGACAAGTTACCTTTGCAAAACGAAGAAATGGTCTTTTGAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCGTCTTCTCCAATAGAGGAAAACTCTATGAGTTTTGCAGCACTTCTAGCATGCTCAAAACTCTTGACAGGTATCAGAAATGCAACTATGGAGCACCCGAAGCTAATGTGACCTCAAAGGAAGCTTTGGAATTAAGCAGTCAACAAGAATACTTGAAGCTTAAGGCACGTTATGAGTCTCTACAACGCTCGCAAAGGAATCTTATGGGAGAAGATCTTGGCCCTCTGAGTAGCAAAGATCTTGAAACACTTGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATCAGATCCACAAGGACCCAATTCATGCTGGATCAGCTTGGTGATCTTCAACGTAAGGAACACTTGCTATGTGAAGCAAACAGAGCTCTCAGACAAAGGATGGAAGGGTATCAAATAAATTCTCTCCAACTGAATCTGAGTGCTGAAGATATGGGATATGGTCGTCATCATCCAGTTCACACCCAGGGTGATGAACTATTTCAACCAATTGAGTGTGAACCAACCTTACAAATTGGATATCAAGCTGATCCAGGATCAGTGGTGACAGCAGGCCCAAGCATGAATAATTTCATGGGTGGATGGTTACCATAA 729 0.4184 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLDRYQKCNYGAPEANVTSKEALELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRMEGYQINSLQLNLSAEDMGYGRHHPVHTQGDELFQPIECEPTLQIGYQADPGSVVTAGPSMNNFMGGWLP 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03051 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Trre5g03051 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre5g03051 242 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre5g03051 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre5g03051 242 FunFam MADS-box transcription factor 7 13 98 - -
Trre5g03051 242 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Trre5g03051 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre5g03051 242 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Trre5g03051 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Trre5g03051 242 Coils Coil 126 146 - -
Trre5g03051 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trre5g03051 242 Pfam K-box region 90 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre5g03051 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre5g03051 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre5g03051 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03051 Trre-Chr5 25344897 25349659 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03051 1 242 MADS-box Gene Family AT1G24260 71.951 3.38e-115 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre5g03051 K-box 1.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03051 - - gmx:100805078 417.542