Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03050 ATGGGAAGAGGAAGAGTTGAATTGAAGAGAATTGAGAACAAAATCAACAGACAAGTTACCTTTGCAAAACGAAGAAATGGTCTTTTGAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCGTCTTCTCCAATAGAGGAAAACTCTATGAGTTTTGCAGCACTTCTAGCATGCTCAAAACTCTTGACAGGTATCAGAAATGCAACTATGGAGCACCCGAAGCTAATGTGACCTCAAAGGAAGCTTTGGTATTGGAATTAAGCAGTCAACAAGAATACTTGAAGCTTAAGGCACGTTATGAGTCTCTACAACGCTCGCAAAGGAATCTTATGGGAGAAGATCTTGGCCCTCTGAGTAGCAAAGATCTTGAAACACTTGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATCAGATCCACAAGGACCCAATTCATGCTGGATCAGCTTGGTGATCTTCAACGTAAGGAACACTTGCTATGTGAAGCAAACAGAGCTCTCAGACAAAGGATGGAAGGGTATCAAATAAATTCTCTCCAACTGAATCTGAGTGCTGAAGATATGGGATATGGTCGTCATCATCCAGTTCACACCCAGGGTGATGAACTATTTCAACCAATTGAGTGTGAACCAACCTTACAAATTGGATATCAAGCTGATCCAGGATCAGTGGTGACAGCAGGCCCAAGCATGAATAATTTCATGGGTGGATGGTTACCATAA 735 0.4177 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLDRYQKCNYGAPEANVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRMEGYQINSLQLNLSAEDMGYGRHHPVHTQGDELFQPIECEPTLQIGYQADPGSVVTAGPSMNNFMGGWLP 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03050 244 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Trre5g03050 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre5g03050 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre5g03050 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre5g03050 244 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Trre5g03050 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre5g03050 244 Coils Coil 128 148 - -
Trre5g03050 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre5g03050 244 FunFam MADS-box transcription factor 7 13 100 - -
Trre5g03050 244 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Trre5g03050 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre5g03050 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 169 - -
Trre5g03050 244 Pfam K-box region 94 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre5g03050 244 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre5g03050 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03050 Trre-Chr5 25344897 25349659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03050 1 244 MADS-box Gene Family AT1G24260 71.951 2.08e-117 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre5g03050 K-box 2.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03050 - - gmx:100778931 418.313