Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03048 ATGCTGAAATCCTTGAGGAAAATCTTATCCCTTCAATTGAAGGATTGTATCAAGAAAAGGAGCGAACATGGTAAAAACTTAGTATCTGTGCAGTTAGTAAATTGCAATGTTTGTGTAGAGGAAAACAAACAATGCAATTGTGACAACATCATGGTTGAGGATAGAAAGAACATTAGTGCTGTAGAAGGCGCCAACGTCGATGCTGAGCATGATGCTAATGCTGATAGTTCTTTTGTTCATGCTGTCATCAACATGGTGGGAATGCTCATAGGTTTGGGGCAATTATCAACTCCATATGCTGTTGAAAAAGGAGGGTGGGCATCTACATTATTGCTTATAGAACTTGGGGTAATGTGTGCTTATACCTCTCATATACTTGGAAAATGTCTTGAAAATAATCCAAATTTAACAAGTTATGTGGATATTGGGAATCAAGCATTTGGATCAAAAGGAAGATACTTAGTTGCAACATTCATCTACATGGAAATCTTTATGGCACTTGTTTCCTACACCATCTCATTACATGACAACTTGATCATAGTATTTTTGGGGACACATTTGAAGCTGAAATTGGCTATGTTATCAACATCACAAATCTTAACCTTGGTGGCAATCTTAATTGCTCTACCTAGTTTATGGATCAGAGATATGTCTTCTATATCTTTCCTTTCAACTGGTGGAATTCTTATGTCTCTTCTAATTTTTATGTGGGTAGCAGTTACTGCCATTTTTGGAGATGTTCAAGCTAATAATCATAGTATACCTGTTTTCAAGCTGCATAATATTCCATCAATATCTGGCCTTTATGTCTTTGGTTATGGAGGACATATTGTTTTCCCTGATTTATATAAAGCCATGAAAGACCCTTCCAAGTTCACTAAGGTTTCAATTGTGAGCTTCACAATAGTTACAGCACTATACACCTCAATGGGATTAATGGGTGCAAAAATGTTTGGAAACAATGTTCAGTCTCAGATAACTCTCAACATGCCACCAAATCAAATAATAACAAAAATTGCTCTTTGGGCAACAGTGTTGACACCAATGACCAAATATACACTTGAATTTGCACCCTTTGCAATTCAGCTAGAACACTCACTTCCAAATTCTCTTAGTGGTAGGACAAAATTGGTAATAAGGGGTTGTGTGGCTTCATTTTTGCTATTGACCATACTAACCCTTGCATTGTCAGTTCCATGTTTTGAGCATGTACTAAGCCTCACTGGTTCACTAGTTAGTGTAGCCATTTGTTTGATTTTTCCATGTGCTTTCTATATGAAGATTTTTTGGGGTAAAATAACAAGGCCTCTCTTAGTCCTTAATATTTTTCTAGTGATGTTTGGGTTTCTTCTTGGGGTGATGGGCACTATTTCCTCCACGGAGTTAATATTGAAAAAATTTCTATCACATCATTCAACTTGA 1422 0.365 MLKSLRKILSLQLKDCIKKRSEHGKNLVSVQLVNCNVCVEENKQCNCDNIMVEDRKNISAVEGANVDAEHDANADSSFVHAVINMVGMLIGLGQLSTPYAVEKGGWASTLLLIELGVMCAYTSHILGKCLENNPNLTSYVDIGNQAFGSKGRYLVATFIYMEIFMALVSYTISLHDNLIIVFLGTHLKLKLAMLSTSQILTLVAILIALPSLWIRDMSSISFLSTGGILMSLLIFMWVAVTAIFGDVQANNHSIPVFKLHNIPSISGLYVFGYGGHIVFPDLYKAMKDPSKFTKVSIVSFTIVTALYTSMGLMGAKMFGNNVQSQITLNMPPNQIITKIALWATVLTPMTKYTLEFAPFAIQLEHSLPNSLSGRTKLVIRGCVASFLLLTILTLALSVPCFEHVLSLTGSLVSVAICLIFPCAFYMKIFWGKITRPLLVLNIFLVMFGFLLGVMGTISSTELILKKFLSHHST 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03048 473 PANTHER AMINO ACID TRANSPORTER 67 456 - -
Trre5g03048 473 Pfam Transmembrane amino acid transporter protein 76 457 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03048 Trre-Chr5 25298680 25300862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03048 35 471 Amino Acid or Auxin Permease AAAP Family AT5G16740 58.409 1.02e-166 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03048 - - lang:109342470 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03048 5 25298680 25300862 Trre5g03048 5 25298680 25300862 ECH