Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03037 ATGGTGGCATATGCGAATAGCCACACGTTTAGCTATGTTCCTCATGTTGTTCGGGAGATGAGGAAAGAGCGACAATTGTTATTTCGTTTGGAGGATAAGGGTGTGATCAAGCGCAATGAGCCTCATATTTGTTGTGTTTGTGGGAGAAAATTTTATACTAATGAAAAGCTTGTTAATCATTTCAAGCAACTGCATGAGCGTGAGCATGTGAAAAGGGTGAATCGGATTGAGTCGGCTAGAGGGAGTAGGAAGGTGAAATTGGTGGGTAAGTATTCTATGAAAATGGATAAGTATAAGAAGGCTGCGAGTGCTGTTTTGACTCCTAAAGTTGGGTATGGTTTGGCGGATGAGCTGAAACGGGCAGGGTTTTGGGTTCAAACTGTGTTGGATAGACCGCAAGCTGCGGATATTGCGTTGCAAAAGCATATGGTGGATATGATGGATCATAGGCGGGTTGAGTGTGTGGTTCTTGTATCCGATGATTCTGATTTTGTTGATGTAATAAAGGAGGCCAAACTACGGTGTCTCAAGACTGTTGTTATTGGGGATATTAGTAGTGACGGAGTCTTGAAAAGGACGGCTGATGCTGCCTTTTCTTGGGAGGAAATTTTGACGGCGAAGGCTAAGAAGGAGGCTGTATCAGTTGTGGAAAATTGGAAAGATCGTGATATATTGAAAAGGTTGGAGTGGACATACAATCATGACGTGGATAAAAAGAAACTCAACCTAGATGATGCAGTTGCTGAAACATCTGGAGATGATGATATTGAAGATATCTTCAATGATGTTGATGATGACTACAAGGATGACAGAGGTGCTTGGTGGGAATTAGACTCTGATGATAATGATGTTAGAACTGGATAA 864 0.4201 MVAYANSHTFSYVPHVVREMRKERQLLFRLEDKGVIKRNEPHICCVCGRKFYTNEKLVNHFKQLHEREHVKRVNRIESARGSRKVKLVGKYSMKMDKYKKAASAVLTPKVGYGLADELKRAGFWVQTVLDRPQAADIALQKHMVDMMDHRRVECVVLVSDDSDFVDVIKEAKLRCLKTVVIGDISSDGVLKRTADAAFSWEEILTAKAKKEAVSVVENWKDRDILKRLEWTYNHDVDKKKLNLDDAVAETSGDDDIEDIFNDVDDDYKDDRGAWWELDSDDNDVRTG 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03037 287 CDD PIN_LabA-like 52 183 - -
Trre5g03037 287 ProSitePatterns Zinc finger C2H2 type domain signature. 44 65 IPR013087 -
Trre5g03037 287 Pfam NYN domain 114 196 IPR021139 GO:0004540
Trre5g03037 287 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 1 284 - -
Trre5g03037 287 Gene3D - 46 204 - -
Trre5g03037 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 70 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03037 Trre-Chr5 24913066 24913929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03037 1 282 C2H2 Transcription Factor Family AT4G12240 58.304 2.16e-112 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre5g03037 NYN 2.3e-08 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03037 - - tpra:123908087 520.776