Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03022 ATGCTTGAGAAAGAAGTGATTGAACCCAGGAATCAGGAACGGTACCAAGGCAAAAACCCTTACTATAGATATGACATGGAGCCTTTTAGGGTCAGGAGGAAAGATTTTTGGTTGCTCTCTACTGTCACAAAACTTTTGAACGAATTCATTCCAAAACTCTCGCATGATGCAGATGGTCTCATATTTCAGGGATGGGACGATCCTTATGTACCTCGCACTCATGAAGGTCTCTTAAAGTGGAAGTATGCTGATCTGGATTCAGTTGATTTTCTCTTTGAGATTGATGATGATCGTCAGCTTCTTCTTCTCTATGAACGTGGAAAAAAGAAACTCATGGAAGGGTATATTGTTGCATTCGAAGCAAGTATTTTTGGGGAAGTTTCTATAGATTTTGCTGATTATGCCGAAGCTACAAAGATTTCTTTAGTTTCTCTTCCCATCAAGAATTCACATTCTGATGCTGTCTTGCATGTATCAATCCAGAGATTACATGAAAATACTGATAGGAGCTTAAGGACCTATTTAAGCAATGGTGATCTTAATGGATGA 549 0.388 MLEKEVIEPRNQERYQGKNPYYRYDMEPFRVRRKDFWLLSTVTKLLNEFIPKLSHDADGLIFQGWDDPYVPRTHEGLLKWKYADLDSVDFLFEIDDDRQLLLLYERGKKKLMEGYIVAFEASIFGEVSIDFADYAEATKISLVSLPIKNSHSDAVLHVSIQRLHENTDRSLRTYLSNGDLNG 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03022 182 PANTHER MRNA-CAPPING ENZYME 1 116 - -
Trre5g03022 182 Gene3D DNA ligase/mRNA capping enzyme 1 81 - -
Trre5g03022 182 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 2 82 - -
Trre5g03022 182 Pfam mRNA capping enzyme, catalytic domain 1 81 IPR001339 GO:0004484|GO:0005524|GO:0006370
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03022 Trre-Chr5 24624029 24626058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03022 1 119 Protein tyrosine phosphatase (PTP) family AT3G09100 70.000 9.01e-52 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03022 K13917 - gmx:100803597 235.343