LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g03014	ATGTCTTCATCATCTTCATCATCATCATCATCATCATCCTTCAATTTGAATTCTCATCAATGGATGTACGACGTGTTCATAAATTTCAGAGGGGGAGACACACGTAAGAACTTGGTTTCTCATCTATATGCTGCTCTATCAAATGCCGGAATCAACACTTTTCTTGACGATGAAAAGCTTAAAAAGGGATGGGAAGTAGAACCAGAACTATTGCGAGCAATTCAAGGTTCTCAAATATGCTTAGTTATTTTCTCAAAACACTACACTCAATCTAGTTGGTGTCTTGTTGAACTGGTGAAAATCATGGAACACCGCAGAAGTAATAATAATGGTCCCGTGGTTATACCCATATTTTACCATGTTGACCCATCTGTCGTTCGTCGTCAGGTGGGTGATTTTGGAAAAGCTTTGGAAGCTATTACCAAAAGAATTCAACCGGAAAAAGACAGGCAAGAACTTTTGCGGACATGGAAGCGTGCTCTCAATCAAGCTGCAAATATTTCTGGATGGGATTCCAGCACTTTCAGGAGTGAGAATGAACTAGTGAACAAAATTGTTGACGAAGTTTTGAGAAAGCTGGAAAACACATTCTTACCTACTACGGAATTCCCAGTTGGGCTAGAGTCCCGTGTGGACCAAGTGTTTATGTCGATTGAAAATCAATCAAGCAAAGTTTCTATGGTAGGGATCTGGGGAATGGGTGGGTTGGGTAAAACTACCACAGCCAAAGGCATCTACAATAAAATTCATCGCAAATTCGTGCATAGAAGTTTCATTGAGAATATTAGACAAACTTGTGAATCAGATAAAGGGTATATTCGGTTACAGCAACAACTTCTTTCAGATCTCTTCAAAACAAAGGAGAAGATACACAACATTGCATCGGGGACAGCTATAATCAACAAAAGAATCTCTGAAAAAAAGGTGCTCCTTGTACTTGATGATGTGACCAAAGAACAGCAAGTTAAAGCTCTATGTGGAAATCCTAAATGTTTAGGCTTGGGAAGTGTACTAATTGTTACAACAAGGGATGCACACATACTTAGGAGACTTGAAGTTGACCAATTCTGTACAGCAGAAGAAATGAACGAAAATGAGTCCCTTGAGCTTTTCAGTTGGCATGCTTTTAGAAGCGCATCTCCAAAAGTTAATTTCAGTGAACTCTCACAAAATGTAGTTAATTACTGCGGAGGATTACCTCTAGCTGTGGAAGTCCTCGGATCTTACTTATATAAAAGGTCAAAAGAAGAATGGAAAAGTGTGCTATCAATATTAGAAAAAATTCCCAATGAAGAAGTGCAAGAGAAACTGAGAATAAGCTATGATGGTTTAACGGATGACACGAAGAAGGCTATATTTCTTGATGTATGTTGTTTCTTTATTGGCAAGGACAAAGATTATGTTACTGAGATACTAAATGGATGTGGACTTTTTGCTGGTATCGGAATAGCTGTCCTCATAGAGAGGAGCCTTCTAAAGGTCGAAAAGAATAACAAGCTTGGAATGCATGATTTAATAAGAGACATGGGAAGAGAAATTGTTCGGGAAGGTTCAACAAAAGATCCTGGGGAGCGTAGTCGGCTGTGGCTGCAGAAGGACGTACATGATGTTTTAACAAAGAATACGGGAACGCAAAACGTTGAGGGATTGATTTTGAACTTGCAAAGAAAAGGAAGAGATAGCTTCAATACCAATGTTTTCCAGCATATGAAGAACATGAGACTTTTGCAACTTGATTGTGTTGACCTCACTGGAGATTTTGGACATCTTTCCAAAGAATTGAGATGGCTCAATTGGCAACGATCTACCTTCAACTGTATACGCAATGACTTTTATTTGGGGAATCTAGTTGTTCTCGAATTAAAATATAGCCATGTTAAACAAGTTTGGAAGGAAACCAAGTTGTTGGACAAGCTAAAAATACTGAATCTTAGTCATTCCAAGTACTTGAAAAGCACCCCTGACTTTTCAAAATTACCGAATCTAGAAAAGCTCATTATGAAGGATTGTCCAAGTTTGTCCGAGGTACACCCATCCATTGGAGTTCTCAAGAATCTTCTTCTGATAAATGTGAAGGACTGTACAAGTCTTGGCAATCTACCAAGGGAAATTTATCAGTTAATATCTGTGAAAACACTCATCCTTGATGGTTGTTCAAAGATTGACAAATTGGAAGAAGATATAGTGCAAATGACATCCTTGACAACTTTAGTTGCAGCAAATACCGGCGTCAAACAAGCACCCTTTTCCATAGTTAGATCAAAAAGCATTATGTATATATCCCTATGTGGCTATGAAGGATTATCGCGTGATATTTTTCCTTCTCTCATTTGGTCTTGGATGTCACCAACAATGAATTCATTACCACACATTCCCCCCACTTCCATGGATGTAGAGAGTAATAATTTGGTTCTGGGTTATCAATCAACAATGCATAGTAGTTGTTCAGAACATAGAAGTGTTTGGGTACAATGCCAATCGGAGATTCAACTAATTGAAATATTGACTAGTTTTTTTGATGGTCTATATGGTGCAAACCTTACTGAATCGGAAACATCACAAATCTCGGATCTTTCCTTGAAATCTCTTTTGGTTACAATGGGAAGTTGCCACATAATCATTGATGCTCTTGGCAAGAGCTTATCACAGGGATTGACAACCAATGATTCTAGTGATTCTTCCCTTCCGGGTGATAATTATCCTTCATGGTTAGCCTATACAAGTGAAGGACCTTCCGTGCGTTTTCAAGTACCCAAGGAGAGTGATAATTGCTTGAAGGGAATAACTTTTTATGTTGTTTATTCATCCACACCCGAAAACATGGAAACTGAATGTCTCACTAGTATTTTGATCATTAATTACACCAAATTCACTTTCCATATATACAAGCGAGACACAGTAATGTCCTCTAACGATGAAGATTGGCAGAGTGTAGTATCAAATTTAGCAGTTGGGGACAATGTGGCGATTTTTGTAGCTTTTGGACATGGATTGACCATTAAGAAGACGGCTGTCTACCTAATATATGGCCAGTCAAATGCTATGCAAATTGAGCCATCAATTACTACAGAAGTTGAACCATCCAGTGAAGTACAAATGGAGCCATTACCTGAACTGGAAGTGCAACCATCATCTAATGTGAAAAGGGAGCCATCACCTGAAGATGAAGTGCAGCTATCACCTGATGTGAAGATGGAGCCATCACTTGTCGTTAAGAATGAGCCATTACCTGAACTGAAAGCGCAACCATCGTCTAATGTGAAAAGGGAGCCATCACCTGATGTGAAGATGGAGCCGTCACCTGTCGTCATGAATGAGCCATTACCGAGGAGAAATAAAAATATATTTGCAAGACTTTCAAAGAGAGTGGGAGAATGTTTACGCTTGAACTAG	3393	0.3893	MSSSSSSSSSSSSFNLNSHQWMYDVFINFRGGDTRKNLVSHLYAALSNAGINTFLDDEKLKKGWEVEPELLRAIQGSQICLVIFSKHYTQSSWCLVELVKIMEHRRSNNNGPVVIPIFYHVDPSVVRRQVGDFGKALEAITKRIQPEKDRQELLRTWKRALNQAANISGWDSSTFRSENELVNKIVDEVLRKLENTFLPTTEFPVGLESRVDQVFMSIENQSSKVSMVGIWGMGGLGKTTTAKGIYNKIHRKFVHRSFIENIRQTCESDKGYIRLQQQLLSDLFKTKEKIHNIASGTAIINKRISEKKVLLVLDDVTKEQQVKALCGNPKCLGLGSVLIVTTRDAHILRRLEVDQFCTAEEMNENESLELFSWHAFRSASPKVNFSELSQNVVNYCGGLPLAVEVLGSYLYKRSKEEWKSVLSILEKIPNEEVQEKLRISYDGLTDDTKKAIFLDVCCFFIGKDKDYVTEILNGCGLFAGIGIAVLIERSLLKVEKNNKLGMHDLIRDMGREIVREGSTKDPGERSRLWLQKDVHDVLTKNTGTQNVEGLILNLQRKGRDSFNTNVFQHMKNMRLLQLDCVDLTGDFGHLSKELRWLNWQRSTFNCIRNDFYLGNLVVLELKYSHVKQVWKETKLLDKLKILNLSHSKYLKSTPDFSKLPNLEKLIMKDCPSLSEVHPSIGVLKNLLLINVKDCTSLGNLPREIYQLISVKTLILDGCSKIDKLEEDIVQMTSLTTLVAANTGVKQAPFSIVRSKSIMYISLCGYEGLSRDIFPSLIWSWMSPTMNSLPHIPPTSMDVESNNLVLGYQSTMHSSCSEHRSVWVQCQSEIQLIEILTSFFDGLYGANLTESETSQISDLSLKSLLVTMGSCHIIIDALGKSLSQGLTTNDSSDSSLPGDNYPSWLAYTSEGPSVRFQVPKESDNCLKGITFYVVYSSTPENMETECLTSILIINYTKFTFHIYKRDTVMSSNDEDWQSVVSNLAVGDNVAIFVAFGHGLTIKKTAVYLIYGQSNAMQIEPSITTEVEPSSEVQMEPLPELEVQPSSNVKREPSPEDEVQLSPDVKMEPSLVVKNEPLPELKAQPSSNVKREPSPDVKMEPSPVVMNEPLPRRNKNIFARLSKRVGECLRLN	1130

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g03014	1130	FunFam	Disease resistance protein (TIR-NBS-LRR class)	19	195	-	-
	Trre5g03014	1130	Pfam	NB-ARC domain	209	436	IPR002182	GO:0043531
	Trre5g03014	1130	SUPERFAMILY	Toll/Interleukin receptor TIR domain	16	170	IPR035897	-
	Trre5g03014	1130	Gene3D	-	19	189	IPR035897	-
	Trre5g03014	1130	SUPERFAMILY	L domain-like	502	778	-	-
	Trre5g03014	1130	MobiDBLite	consensus disorder prediction	1023	1107	-	-
	Trre5g03014	1130	Gene3D	-	361	445	IPR042197	-
	Trre5g03014	1130	FunFam	Disease resistance protein (TIR-NBS-LRR class)	363	445	-	-
	Trre5g03014	1130	SMART	till_3	22	167	IPR000157	GO:0007165
	Trre5g03014	1130	Gene3D	-	190	355	IPR027417	-
	Trre5g03014	1130	Gene3D	Ribonuclease Inhibitor	519	738	IPR032675	-
	Trre5g03014	1130	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	193	454	IPR027417	-
	Trre5g03014	1130	Pfam	TIR domain	23	197	IPR000157	GO:0007165
	Trre5g03014	1130	ProSiteProfiles	TIR domain profile.	21	193	IPR000157	GO:0007165
	Trre5g03014	1130	PRINTS	Disease resistance protein signature	396	410	-	-
	Trre5g03014	1130	PRINTS	Disease resistance protein signature	227	242	-	-
	Trre5g03014	1130	PRINTS	Disease resistance protein signature	634	650	-	-
	Trre5g03014	1130	PRINTS	Disease resistance protein signature	303	317	-	-
	Trre5g03014	1130	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	23	753	IPR044974	GO:0006952

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g03014	Trre-Chr5	24480059	24485310	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre5g03014	23	751	WRKY Transcription Factor Family	AT4G12020	29.561	2.67e-77	278

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g03014	-		-	tpra:123923859	1340.48