Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03008 ATGGCTCCTCCAAAATCAAAACTCAAAACCCTAATTTCTCTCTCTAAACTCTTCCTTTCTTTCTCTCTCCTCCTCCACACCGCCATTGCCGACGATGGCGTCTTCATGTCCAAGCTTGCAAAAGCCCTTACTCCAACTCCATCAGGTTGGTCGTCGACAACCACATTCTGCAACTGGACCGGCGTCAAATGCGACGGTTCAAACCGAGTAACATCGATCAATTTATCTTCCAAATCACTCACCGGAACACTACCTTCCGATCTGAACTCACTTTCTGAACTCACCACACTTTCTCTTCAATCCAACTCTCTCTCCGGCGAGTTACCTTCACTCGCTAACCTCTCAAATCTTCAAACGGTTTTCCTCGGAAACAATAACTTCACTTCAATCGCTAAAGGCTGCTTCGAAGGACTCACCAGTCTCCAGAAACTTATCTTAACTCAGAACCTTAACCTTGCACCGTGGACGATTCCGACTGAGTTGACTCAGTCTTCGAACCTAGTCGAACTTGACCTTGGTCAAACGAATCTCATAGGTTCGTTGCCGGATATATTCGATCCATTGGTTAGTTTGCAGAAACTTCGTCTTTCTTACAACAACCTCACCGGAGATTTACCTAAGTCATTCTCCGGATCTGGGATTCAGAATTTGTGGCTTAACAATCAGCAAGATGATTTTGGGTTTACTGGTTCTATTGATTTGCTTTCTTCGATGTCACATTTGGCTCAAGTTTGGTTTCAGAAGAACAAGTTCACTGGTCCAATACCTGATTTATCAAACTGTACTAATTTGTTTGATTTGCAGCTTCGTGATAATCAGTTAACAGGTGTTGTTCCGTCTTCTTTGATGAGTTTATCTAGCTTGACGAATGTTTCGTTGGATAATAACAAGTTGCAGGGTCCTTTTCCTTCTTTTGGGAAAGGTGTAAAGGTTACTCTTGATGATGGGATTAATAGCTTTTGTGGAAAAACTCCTGGTCCTTGTGATCCTAGGGTTACAACTTTGCTTGATATTGCTGCTGGTTTTGGATATCCTCTTCAGTTGGCTAGTTCTTGGAGAGGAAATGATCCTTGTGCAGATTGGAGCTTTGTTGTGTGTTCAGGATCGAAGATTATTACAATCAATTTACCAAAGCAGCATTTGAATGGGACCATTTCACCTGCATTTGGGAATTTAACTGATTTGAGGAATTTGTATTTAGATGGTAATAATTTGTCAGGTTCGATACCCGGGAGTTTGACGGGTTTGACTCAACTTGAGGTTTTGGATTTGTCTAACAACAATCTATCTGGAGATATTCCTAAGTTTTCGGCTAAAGTGAAGTTCAATTCTGCTGGTAATGTTTTTCTTGGGCATTCGGGAGGTGATGGAGGAAGTGGAACTACTCCATCGACGGATTCCAGTGGTGCACCAAACGGAAGTCCATCCGGAAAGGCAAGTGGTTCTTCACTTTCGGCTGGTTGGATCGCAGGTATAGCTGTTATTGTTGTGTTTTTTGTTGCAGTGGTGTTGTTTGTGTTTTGTAAGTGTTATACTAAGAATCGGAGGCATGGGAAATTCGGAAGGGTTAATAATCCTGAAAATGGTAAAGGTGATGTTAAAATTGATGTCATGAGTGTTTCTAATTCTAATGGATATGGTGGAGTTGCGAGTGAGTTACAGAGTCAGGGAAGTGAGCGCAGTGACATTCAGGTTTTTGAGGGCGGAAATGTTACTATTTCTATCCAAGTTCTTAGGCAAGTCACTGGTAATTTCAGTGAAGATAACATTTTGGGTCGGGGAGGATTTGGAGTTGTTTATAAAGGGGAATTGCATGATGGGACTAAGATTGCTGTCAAGAGGATGGAATCTGTTGCAGTGGGAACTAAGGGATTGAACGAGTTCCAAGCAGAGATTGCAGTTCTAACTAAAGTTAGGCATAGGCATTTGGTTGCTCTTTTAGGATTCTGCATAAATGGCCATGAAAGGCTTTTGGTGTATGAGTATATGCCACAAGGAACATTAACACAACATCTGTTTGATTGGGGTGAAAATGGATGTGCTCCTTTGACTTGGAAACAGAGGGTAGCAATAGCTTTGGATGTAGCTCGGGGAGTGGAATACTTGCACAGCTTAGCTCAACAAAGCTTCATTCACAGGGACTTAAAACCCTCCAACATACTATTGGGTGATGACATGAGAGCAAAGGTTGCAGATTTTGGGTTGGTTAAAAATGCACCGGATGGCAAATATTCCGTCGAGACAAGGTTGGCTGGAACATTTGGATATTTGGCACCTGAATATGCAGCCACTGGAAGAGTGACAACCAAAGTAGATGTTTACGCATTTGGAGTAGTTCTGATGGAACTAATTACTGGTAGAAGGGCATTGGACGATTCTATGCCTGACGAAAGATCGCATTTGGTTTCATGGTTCCGTAGGGTACTAATAAACAAGGAGAACATCCCTAAGGCAATTGATCAAACACTGAACCCTGACGAAGAAACCATGGAGAGCATATATAAAATTGCTGAGCTTGCAGGCCATTGCACTGCTCGCGAACCACACCAGCGACCAGATATGGGACATGCAGTGAATGTCCTCGTTCCTCTAGTAGAGCAATGGAAGCCTAGCAACCATGAAGAAGAAGATGGTTATGGTATTGACCTTCACTTGAGCCTTCCCCAAGCTCTGCAAAGATGGCAAGCCAATGAAGGCACTTCCACAATGTTTAATGACATGTCTTTCTCACAAACCCAATCAAGTATTCCATCAAAACCTTCAGGATTTGCAGACTCCTTTGATTCAATGGATTGCCGGTAA 2802 0.4261 MAPPKSKLKTLISLSKLFLSFSLLLHTAIADDGVFMSKLAKALTPTPSGWSSTTTFCNWTGVKCDGSNRVTSINLSSKSLTGTLPSDLNSLSELTTLSLQSNSLSGELPSLANLSNLQTVFLGNNNFTSIAKGCFEGLTSLQKLILTQNLNLAPWTIPTELTQSSNLVELDLGQTNLIGSLPDIFDPLVSLQKLRLSYNNLTGDLPKSFSGSGIQNLWLNNQQDDFGFTGSIDLLSSMSHLAQVWFQKNKFTGPIPDLSNCTNLFDLQLRDNQLTGVVPSSLMSLSSLTNVSLDNNKLQGPFPSFGKGVKVTLDDGINSFCGKTPGPCDPRVTTLLDIAAGFGYPLQLASSWRGNDPCADWSFVVCSGSKIITINLPKQHLNGTISPAFGNLTDLRNLYLDGNNLSGSIPGSLTGLTQLEVLDLSNNNLSGDIPKFSAKVKFNSAGNVFLGHSGGDGGSGTTPSTDSSGAPNGSPSGKASGSSLSAGWIAGIAVIVVFFVAVVLFVFCKCYTKNRRHGKFGRVNNPENGKGDVKIDVMSVSNSNGYGGVASELQSQGSERSDIQVFEGGNVTISIQVLRQVTGNFSEDNILGRGGFGVVYKGELHDGTKIAVKRMESVAVGTKGLNEFQAEIAVLTKVRHRHLVALLGFCINGHERLLVYEYMPQGTLTQHLFDWGENGCAPLTWKQRVAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRRALDDSMPDERSHLVSWFRRVLINKENIPKAIDQTLNPDEETMESIYKIAELAGHCTAREPHQRPDMGHAVNVLVPLVEQWKPSNHEEEDGYGIDLHLSLPQALQRWQANEGTSTMFNDMSFSQTQSSIPSKPSGFADSFDSMDCR 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03008 933 FunFam receptor protein kinase TMK1 548 662 - -
Trre5g03008 933 Pfam Leucine rich repeat N-terminal domain 38 65 IPR013210 -
Trre5g03008 933 Pfam Leucine rich repeat N-terminal domain 333 367 IPR013210 -
Trre5g03008 933 CDD STKc_IRAK 591 864 - -
Trre5g03008 933 SMART serkin_6 585 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03008 933 Gene3D Transferase(Phosphotransferase) domain 1 663 884 - -
Trre5g03008 933 Pfam Protein tyrosine and serine/threonine kinase 588 859 IPR001245 GO:0004672|GO:0006468
Trre5g03008 933 Gene3D Ribonuclease Inhibitor 330 453 IPR032675 -
Trre5g03008 933 ProSitePatterns Protein kinases ATP-binding region signature. 591 613 IPR017441 GO:0005524
Trre5g03008 933 SUPERFAMILY Protein kinase-like (PK-like) 562 861 IPR011009 -
Trre5g03008 933 SMART LRR_typ_2 114 137 IPR003591 -
Trre5g03008 933 SMART LRR_typ_2 392 415 IPR003591 -
Trre5g03008 933 SMART LRR_typ_2 188 211 IPR003591 -
Trre5g03008 933 SMART LRR_typ_2 416 440 IPR003591 -
Trre5g03008 933 MobiDBLite consensus disorder prediction 457 477 - -
Trre5g03008 933 ProSiteProfiles Leucine-rich repeat profile. 418 440 IPR001611 GO:0005515
Trre5g03008 933 MobiDBLite consensus disorder prediction 453 477 - -
Trre5g03008 933 Gene3D Ribonuclease Inhibitor 34 328 IPR032675 -
Trre5g03008 933 Pfam Leucine rich repeat 112 149 IPR001611 GO:0005515
Trre5g03008 933 Pfam Leucine rich repeat 374 429 IPR001611 GO:0005515
Trre5g03008 933 FunFam Receptor-like kinase TMK4 30 326 - -
Trre5g03008 933 ProSitePatterns Serine/Threonine protein kinases active-site signature. 710 722 IPR008271 GO:0004672|GO:0006468
Trre5g03008 933 Gene3D Phosphorylase Kinase; domain 1 547 662 - -
Trre5g03008 933 FunFam Leucine-rich repeat receptor-like kinase 330 453 - -
Trre5g03008 933 ProSiteProfiles Leucine-rich repeat profile. 93 115 IPR001611 GO:0005515
Trre5g03008 933 PANTHER OSJNBA0070M12.3 PROTEIN 17 933 - -
Trre5g03008 933 FunFam receptor protein kinase TMK1 663 880 - -
Trre5g03008 933 ProSiteProfiles Protein kinase domain profile. 585 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03008 933 SUPERFAMILY L domain-like 44 434 - -
Trre5g03008 933 MobiDBLite consensus disorder prediction 910 933 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03008 Trre-Chr5 24440311 24444314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03008 70 861 Receptor kinase-like Gene Family AT5G07280 32.761 3.27e-96 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trre5g03008 PK_Tyr_Ser-Thr 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03008 - - gmx:100781851 1429.08