Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02991 ATGGAAAGTTCGACGACGGGGTCAGGCGGCGGCGGTGGTGGTAGTCCAGCACCGTTCCTAGTGAAAACGTACGAGATGGTTGATGATTCATGTACAGATGAGATAGTATCATGGAGTGAAACTAACAACAGTTTCATCGTATGGAATCCAACTGAATTTGCTCGTCTTCTTCTTCGTAATTATTTCAAACACAACAATTTCTCCAGCTTCATTCGTCAGCTTAATACTTATGGATTTCGAAAAATACATCATGAACAATGGGAGTTTGCTAATGAATATTTTGTGAAAGATCAAAAGCATCTTCTTAACAAGATTCACCGTAAGAAACCAATTCACAGTCACAATCATTCACAAGGCTCTCATGTAGATCCAGAAAGATTAGCATTTGAGGAAGAAATAGAGAAACTTTCAAATGAGAAAACTACTATTCAATCCAATATTTCAAACTTCAAGCAAAATATATCAACCGCAAAGCTTCATTTAGAAGAACTGCAACAACGATTAGACGGCATGGAGAAGAGGCAGAAAAACTTGTTGAACTTATTTGAAAGGGAGCTTCAGAATCCTAAATTTGTTGAACAAATTTATCAGAAAATCGAGTCCTTAAATTTATCAGGACACAACAAGAAAAGGCGATTTCCTCATGTTGCTGAAAATAGTTTTGTTGACAACGATAGCAATTTTGGAATAACCGAAGTTGGAAATATGAATATTTTCCGTGAAGATTTCTGCAGTAAACTCAACTTGTTATCAACTACTAGTTCAAATGAAGATGGAGAAAGCGCACATAATAAGATGTTGTGCGAAGGAGAATTACCGAAAGAAACTCTTACATTTGCATCTCCTTCGGTCAATTCTATCTCAGAGCATACCGATAATGGAGCATGCTTCACTTTTGATATGGATTCATGCTTATCACAAGGTGGAAAATTGAACTCCTCGGAACCGAAGAGCGGAGAAAGTGATTGTGATCAAATATGCTGTCTTTTAAGTCTAACTTTGGTATCTTCTCCAGCAATAGATATATCAGCACAAATAGACTGTCAAGAAATCGGCAAATCAGTCGAATCAAGATTTCATACCAATGATCATAAAGAATGTGATATCGGAGCTTTCTCAAACAGGAATTTGGATAATGTGGTTACAAATTTAGCTTCCTTAATTGAGTCTCCTAGTAACAACCAAGGGATCCCAGCTGCTCCAGTTAAAGACAGAGTGAATGATCTGTTTTGGTCACAGTACCTTACAGAATGA 1254 0.3716 MESSTTGSGGGGGGSPAPFLVKTYEMVDDSCTDEIVSWSETNNSFIVWNPTEFARLLLRNYFKHNNFSSFIRQLNTYGFRKIHHEQWEFANEYFVKDQKHLLNKIHRKKPIHSHNHSQGSHVDPERLAFEEEIEKLSNEKTTIQSNISNFKQNISTAKLHLEELQQRLDGMEKRQKNLLNLFERELQNPKFVEQIYQKIESLNLSGHNKKRRFPHVAENSFVDNDSNFGITEVGNMNIFREDFCSKLNLLSTTSSNEDGESAHNKMLCEGELPKETLTFASPSVNSISEHTDNGACFTFDMDSCLSQGGKLNSSEPKSGESDCDQICCLLSLTLVSSPAIDISAQIDCQEIGKSVESRFHTNDHKECDIGAFSNRNLDNVVTNLASLIESPSNNQGIPAAPVKDRVNDLFWSQYLTE 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02991 417 Gene3D - 14 109 IPR036388 -
Trre5g02991 417 Coils Coil 126 181 - -
Trre5g02991 417 Pfam HSF-type DNA-binding 19 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre5g02991 417 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 244 IPR027725 -
Trre5g02991 417 ProSitePatterns HSF-type DNA-binding domain signature. 58 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre5g02991 417 SUPERFAMILY "Winged helix" DNA-binding domain 15 108 IPR036390 -
Trre5g02991 417 PRINTS Heat shock factor (HSF) domain signature 19 42 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre5g02991 417 PRINTS Heat shock factor (HSF) domain signature 57 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre5g02991 417 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre5g02991 417 SMART hsfneu3 15 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre5g02991 417 FunFam Heat shock transcription factor 1 12 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02991 Trre-Chr5 24231857 24233985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02991 19 417 HSF AT4G13980 43.632 3.69e-97 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre5g02991 HSF_DNA-bind 4.2e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02991 K09419 - gmx:100786408 439.499