Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02986 ATGAGTTCAAAAGAAGAGATGATATCTAGCCATGATGTTGAGAGAAGCCAAGAGCTTCGTTTATTTATGTCACCAACACTACAACTCTTAACACCAGACACAAATATCACCATAAACAACAACAACAATGCATCATCCTCCCTTGTCGGTCGCCGCCCTCGAGGGCGTCCACCTAGCTTTAAGAATAAGTCCATGGGTCCTATCGTAGAAACACATGTCAACCGCAATTCACTCAATTTTCATGTGCTTGAGATCACTCATGGTGCGGACGTGTTAAGAAGTGTCTTTGAGTATGCTCGTCGTGAAGGGAAGGGCATATGCATCCTCAATGGAAATGGAATGGTGGCACACGCCATACTTCGTCAACCCACTGGGAGGATTGTCAGCCTTCTGGGAAGATTCAATATTGTTTTAATATCTGGCACAATTCTCCCATCACCAACAAATGCTGGAGAATTGACAGTTTTCTTATCAGACACTACTGGACAAGGGTTTGGGGGGAGTGTGATGCCCCCTCTTACGGCTTTGGGAACAGTGACATTGATGGCCACCTCCTTTGCAGACACTACATTTGAGAAGCTTCCTTCGGTGGAATGA 597 0.4539 MSSKEEMISSHDVERSQELRLFMSPTLQLLTPDTNITINNNNNASSSLVGRRPRGRPPSFKNKSMGPIVETHVNRNSLNFHVLEITHGADVLRSVFEYARREGKGICILNGNGMVAHAILRQPTGRIVSLLGRFNIVLISGTILPSPTNAGELTVFLSDTTGQGFGGSVMPPLTALGTVTLMATSFADTTFEKLPSVE 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02986 198 Gene3D - 79 198 - -
Trre5g02986 198 MobiDBLite consensus disorder prediction 33 49 - -
Trre5g02986 198 SUPERFAMILY AF0104/ALDC/Ptd012-like 76 195 - -
Trre5g02986 198 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 195 IPR014476 GO:0003680
Trre5g02986 198 PIRSF ESCAROLA 1 198 IPR014476 GO:0003680
Trre5g02986 198 ProSiteProfiles PPC domain profile profile. 75 198 IPR005175 -
Trre5g02986 198 CDD DUF296 79 186 IPR005175 -
Trre5g02986 198 MobiDBLite consensus disorder prediction 33 66 - -
Trre5g02986 198 Pfam Plants and Prokaryotes Conserved (PCC) domain 80 187 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02986 Trre-Chr5 24150124 24150720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02986 45 195 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 48.780 7.13e-41 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02986 - - psat:127088334 203.756