Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02977 ATGGCTTTCTGTAACAAGATCGGAAACCTTTTGAGGCAGGGTGCTACTCAGACCAGCCAAGCCCCTGTTTCATCCATGCTTAACTACCTTCGCCACATGTCTTCGAGCAAGCTTTTTGTTGGAGGTCTTTCTTATGGAGTTGATGACCAATCTCTTAGGGATGCATTTGCAACCTATGGAGAGGTGATCGAGGCAAGAGTTATCACTGATAGAGATACTGGGAGATCAAGGGGATTTGGATTTGTCAACTACACCAGTGAGGATGCTGCAGGTCAAGCACTCGCTATGGATGGGCAGGATTTAAATGGGCGACCCATTCGTGTGTCTTATGCAAATGATAGACCTTCTGGACCTCGTCCTGGTGGTGGCGGCGGGTATGGCGATGGCGGTGGTCGGTATGGTGGCGGCGGCGGTGGTGGTTGGTGA 426 0.5094 MAFCNKIGNLLRQGATQTSQAPVSSMLNYLRHMSSSKLFVGGLSYGVDDQSLRDAFATYGEVIEARVITDRDTGRSRGFGFVNYTSEDAAGQALAMDGQDLNGRPIRVSYANDRPSGPRPGGGGGYGDGGGRYGGGGGGGW 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02977 141 SMART rrm1_1 37 109 IPR000504 GO:0003723
Trre5g02977 141 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Trre5g02977 141 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 113 IPR000504 GO:0003723
Trre5g02977 141 Gene3D - 14 141 IPR012677 -
Trre5g02977 141 FunFam Glycine-rich RNA-binding protein 2 25 141 - -
Trre5g02977 141 CDD RRM2_NsCP33_like 37 111 - -
Trre5g02977 141 SUPERFAMILY RNA-binding domain, RBD 26 140 IPR035979 GO:0003676
Trre5g02977 141 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 32 136 - -
Trre5g02977 141 MobiDBLite consensus disorder prediction 106 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02977 Trre-Chr5 23984391 23985311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02977 35 126 Eukaryotic Initiation Factors Gene Family AT4G34110 40.860 3.93e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02977 - - gmx:100527220 184.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02977 5 23984391 23985311 Trre5g02977 5 23984391 23985311 ECH