Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02976 ATGTTACCGTTTTGCTCAGCAACACCGTGTTATTCCCCTTCTTCTCAGATTCCTTTATTTGGGGGATTTCAATCTCTGTATCCAATTCGAAAGGATTTTGAGAGTAAATGTGTTGCAGAAGAAAGTTTACATTTAGGTTTGCATTATGGAACACCTTCAATTAGAAATTCATTTGCAACACAAGCTATAAAGAATGTTTCAGTATGGGAAAATTCATATTCACTTAGTAATGGTGAATTTAGATATAGTTTATCGACCGTGCCGGAGGAATTAGTAGACTTTGCAGGACAGTCAACTGAAGGATCTGATGCATTAGTAGTACCTGTACAACCAGAAGCGATATTGAGTACTGATATATCGTCGGGGAAGTTTGAATCTGTGTCTAGTTTGATTCAAGGGGGTAATGAATCGTTAGACGCAACAAAAGCAAGTGTCGGTGACCTTGTTTCTGGAGTAAACGAGTCATTCAATGCCGCTGTTAATAAGGGAGAAGATGTTTTACGAAGCTCGCTGGATACGGCTACTTCTTTTGTTGATTCTATTGTTAAAAATGCTACTACATCTGCAGATAATGCTTTTAGTAAGGTGTTTTCTTCTGTTGATCAAACGGGGGATTTGGCGAGTAAGAAAATTACTAGTGTTTCGAGTGGGATAAATGGAGTCACGAGTAAGGCACCTGCTTTGGTTATTGATGTGTTGCGCCGCACAGTCGTTGTGGTAGAGAGTTCTTTATCAAAGGGGGCTTCCTATGTTGTTTACTTGTATGGATCAGCCAAGGAGGTTCTTCCTGCAGAGATTAGGGATTCAGTCAATGTATATGAAGGAAAAGCAACACAAATCTTAAGGCCTGTTGGGTCTGCAACTCAACAGATATACACGGCTTTCTATTCATTGGAGAAGAGTCTTGGTTTGGATCCAAACGACCCAATTATTCCATTTGTTGTTTTTGTCGGCTCTTCAGCAACATTATGGGCTATTTATTGGTTGTGGAAATACGGAGGTTACTCAGGAGATTTATCCCCTAAATCAGCTTTTGAGCTCTTGACTGGGGACTCAAATGCTGTACTTATAGACGTCCGCTCTGAGGATTTGCGAGAAAAAGATGGTATTCCTGATATTCGACGGGCTGCTCGGTTTCGCTATGCAAGTGTATCTCCAATCGAGGTTGATGGCTCCATACGCAAGTTGTTGAAGGGTGGTAGAGACTTGGATGACTTCTTGGTTGCTGTTGTGATTCACAATTTGAAAATTGTTAAGGACAGTTCAAAGGTTATTGTGTTGGATGCTGATGGTACTCGTTCTAAAGGCATTGCAAGGTCCTTGAAGAAAATTGGTATCAAGAATCCATACTTGGTCCAAGGTGGCTTTCAGTCTTGGACTAAACAAAGTCTCCGCATCAAGGAACTCAAACCTGAAACAGCATTTACCATACTTAACGAGGAAGCTGAAGCCATTCTAGAGGATATTAGACCTTCTCCTTGGCAACTTTTAGGTTATGGTACGGCACTACTTGCAGGGTCATATGGATTAGTAGAGTGGGAGAAAACATTGCAGTTTATTGGTGTTTTTGGCCTCGGTTTGACCTTATATCTGCGGGTTTCTTCATATGAAAGGTCAGAAGATTTGACACAAGATGCAAGGCTATTGCTTGCTCCTGTTAAACTTGGAGGTCAGGCGTTTTCATGGGCTGCCGGAAAATTGGAATCAAATGGCATAGGGTTACCTACATCACCTTCATCTTTAGATGTTCAGAACCGGGTGTTACAGGCCGCTGCCAAACATGAATCCCAACCATCTGACAGTGAAGGTAACCAAGACCCGAATCCCGAATCCACAGTTACTCTCAATCAAAATGCATGA 1860 0.4156 MLPFCSATPCYSPSSQIPLFGGFQSLYPIRKDFESKCVAEESLHLGLHYGTPSIRNSFATQAIKNVSVWENSYSLSNGEFRYSLSTVPEELVDFAGQSTEGSDALVVPVQPEAILSTDISSGKFESVSSLIQGGNESLDATKASVGDLVSGVNESFNAAVNKGEDVLRSSLDTATSFVDSIVKNATTSADNAFSKVFSSVDQTGDLASKKITSVSSGINGVTSKAPALVIDVLRRTVVVVESSLSKGASYVVYLYGSAKEVLPAEIRDSVNVYEGKATQILRPVGSATQQIYTAFYSLEKSLGLDPNDPIIPFVVFVGSSATLWAIYWLWKYGGYSGDLSPKSAFELLTGDSNAVLIDVRSEDLREKDGIPDIRRAARFRYASVSPIEVDGSIRKLLKGGRDLDDFLVAVVIHNLKIVKDSSKVIVLDADGTRSKGIARSLKKIGIKNPYLVQGGFQSWTKQSLRIKELKPETAFTILNEEAEAILEDIRPSPWQLLGYGTALLAGSYGLVEWEKTLQFIGVFGLGLTLYLRVSSYERSEDLTQDARLLLAPVKLGGQAFSWAAGKLESNGIGLPTSPSSLDVQNRVLQAAAKHESQPSDSEGNQDPNPESTVTLNQNA 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02976 619 Pfam Rhodanese-like domain 347 461 IPR001763 -
Trre5g02976 619 Gene3D - 335 471 IPR036873 -
Trre5g02976 619 ProSiteProfiles Rhodanese domain profile. 350 468 IPR001763 -
Trre5g02976 619 PANTHER RHODANESE/CELL CYCLE CONTROL PHOSPHATASE SUPERFAMILY PROTEIN 1 616 IPR044690 GO:0009704|GO:0071277|GO:0090333
Trre5g02976 619 SMART rhod_4 340 465 IPR001763 -
Trre5g02976 619 MobiDBLite consensus disorder prediction 589 619 - -
Trre5g02976 619 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 323 466 IPR036873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02976 Trre-Chr5 23961841 23967941 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02976 312 429 Sulfurtransferasese or Rhodanese AT5G23060 28.571 2.03e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02976 - - gmx:100786142 909.442