Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02969 ATGATTGCTCATGTCGGTGATTTTGGCATAGCAAGACTCGTCTCAGTCATTGGCGGCACCTCTCATAAATATACTAGTACAATTGGAATAAAAGGAACTGTTGGCTATGCTCCTCCAGAGTATGGAATGGGTTCTGAAGTGTTCACATGTGGTGACATGTATAGCTTTGGAATCCTAATGTTGGAAATGCTTACCGGTAAAAGACCCACCGATGAAGCTTTTGAAGATGGTCAAAATCTGCATAACTTTGTTGGGAATTTATTTCTTGATAATCTTATAAAGATTTTGGATCCAAATCTTTTATTAAGAGATGCAAAAAACAATGAGATTCTTATTCCAAGTACAAAGGAGTGCTTAGTTTCACTTTTCAAGATTGGACTTGTTTGTTCAATGGAATCACCGAAAGAAAGAATGGATATTGTGGATGTCATTAAAGAGCTTATCATAATCAAAAAGGCCTTTCTCGCTGGTGTTCACACTCATAATTAG 489 0.3681 MIAHVGDFGIARLVSVIGGTSHKYTSTIGIKGTVGYAPPEYGMGSEVFTCGDMYSFGILMLEMLTGKRPTDEAFEDGQNLHNFVGNLFLDNLIKILDPNLLLRDAKNNEILIPSTKECLVSLFKIGLVCSMESPKERMDIVDVIKELIIIKKAFLAGVHTHN 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02969 162 Gene3D Transferase(Phosphotransferase) domain 1 1 156 - -
Trre5g02969 162 SUPERFAMILY Protein kinase-like (PK-like) 2 149 IPR011009 -
Trre5g02969 162 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 151 - -
Trre5g02969 162 Pfam Protein tyrosine and serine/threonine kinase 3 147 IPR001245 GO:0004672|GO:0006468
Trre5g02969 162 ProSiteProfiles Protein kinase domain profile. 1 155 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02969 Trre-Chr5 23909253 23910024 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02969 1 155 Receptor kinase-like Gene Family AT3G47110 39.744 3.40e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre5g02969 PK_Tyr_Ser-Thr 2.4e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02969 - - mtr:11405832 235.343