Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02964 ATGAGCATAAATGCAAATGAAACTTTGTTTAATTCAATTACAAGATTGAATGAAACCGGCTACAAAGTTTGTTACGACGCTCCGCCCCATATTGTTTCAGATGGTTTATGGGGTGGTCAAGAAAATGGAAGGACTCCGATGAAATCTTTTTTGCCCGTTATTGAGTTGCAACTGCTTATCATTTTTATCATCACCCAAATATGCAGTTTTCTTCTCAAACCCTTGAGACTTCCTCTATTCATTCCACAAATGATGGCTGGGTTAATTATAGGTTTTTCATTTGAGATAAAGTCATTGGAGCCATACATGACCATGTTGTTTCCATATGGAACACATGATATAGTTTCAGCAATTTCATCAATCGGTTTTGTACTATTTGTATTCATAAACGGTGTACAAATGGATTTCAGCATGATAACAAGAACAGGAAACAAAGCATGGACAATTTCAGTAATGGGATTAGTTATACCATTAGCCATTGGATTTGCACCAATTGTATTATTTCCTGAAAAAGTACAAGCCATTGAAAAAGCACAAGGGAATGGAATTTATGTGGCATTGGTATCTCACAGCATAAGTTCATTTGCAGTAATTGCTTCATTCTTAAGTGAACTTCAAATCCAAAACTCCGAACTTGGTAGATTGGCTTTGTCCTCGGCTTTGGTTATCGACATATTGAGAACAATAATTACAACTAATATTGTTGCTATTATGAGTCATCCTAATATGGAAGTGATTTTAAGAAACTTGTTCTCACTTTTTGCACTTGCTATACTCATTCCATTAATATGTAGGCCACTAATGTTTTGGATAATTAAACATACACCAGAAGGAAGACCTGTGAAAGATGGTTATATTTATATCATCATTACAATGGTTTTTGGTTTAGGTGTTTTATCAGTTAAAATAGATCAAGAATTTATTTTAGGAGCTTTCATTTTGGGACTATCTGTTCCCGAAGGACCTCCTTTAGGATCTGCATTAGTTAAGAAGCTACAATTCTTTGGTCCAACATTCTTTTTACCTATCTTTGTCACTACCTCTGTGTTAAAAGCAGATTTTTCAATGGATATTTCATCATTTGTTATGGTGTCTATTGGTTCTGTCATCCTTGTTACTCATTTGGTCAAAATAACAATCTGTTTTATAACTGCCTTGTTCTGCAAGATGCCCATCACTGATGCTTTGTGTCTTGCCCTCATTTTGAACACCAAAGGCGTAGTCGAAGTCGGCATCTACAATTGCTTATTCGACAATAATATTCTTGATGGGCAATCATATGGAGTGTTGATGATTAGTGTAATAATCACAGCAAGCATTATGCAATGGTCAGTGAAATTACTATATGATCCTTCAAGGAAATATGGTGGATACCAGAAAAGGAGCATAATGAGCTTAAAAGGAAATTCAGAAGTGAGAATACTAATAACACTACAAAAACAAAACCATATTTCAGCAGCAATAGATTTCCTTGACCTAAGTTGTCCAACACATGAAAATCAAATCACTGTTGATGTACTTCATGTAATTGAGCTAGTTGGAAGAGCTTTACCTCTTTTCATTCCTCATTGCCTTCAACAACAAGCATCGAGATCGGCTTCACACAGATCATACTCTGACGATATCATCCTTGCTTTCGATATGTACGAACACCATAATGCAGATGCAGTGACAATAAACACTTACACAGCAATATCCCCAGCAAATCTCATATTTGAAGATGTTTGTAACCTTGCATTGGACAAAGTTGCATCCATCATCATTCTTCCATTTCATATAAGGTGGTCTAGTGATGGCGTAGTTGAATCTAATGACAAAAAGATTTTAAGACCATTGAACCAAAGAGTCCTTGAAATAGCTCCATGTTCTGTTGGAATCCTCGTAACTCGCGCTAATTCAATACCAAAAGCAACAACAACATCAGAATATTCCACTGCACGATTGGCAGTTATTTATTTAGGTGGAAACGACGACGATGAAGAGGTTTTATGTTTAGCAAAACGATCTATGAATAATCCTAGGATCAACCTTGTTGTTTACCACCTTGTTGGTAAAGATTGCAAAGGGGACTTGGAGCAGTTAATGGTAAATGATGATGATGATGATCAAGTGTTGCAAGAAATTATACATGCTACAAATGTAAGGTATCAAAAGATATTCACAAAAAATGGATCACAAACAGCTTGTTTTCTACGTGAAGTTGTGAATCAACATGATTATTTTATAGTTGGAAGAAGACATGAAACTCATTCTCCTCAAACTGATGGATTAACAGATTGGATTGAATTTCCAGAACTTGGTGCTATTGGTGATTTTCTTGCTTCACCTGATCTTAATAGTCGTGCATCTATTTTGGTTGTGCAACAACAACTCTCACACAAGAATGAACACAAAAGTTGGATTTTGTAG 2409 0.3562 MSINANETLFNSITRLNETGYKVCYDAPPHIVSDGLWGGQENGRTPMKSFLPVIELQLLIIFIITQICSFLLKPLRLPLFIPQMMAGLIIGFSFEIKSLEPYMTMLFPYGTHDIVSAISSIGFVLFVFINGVQMDFSMITRTGNKAWTISVMGLVIPLAIGFAPIVLFPEKVQAIEKAQGNGIYVALVSHSISSFAVIASFLSELQIQNSELGRLALSSALVIDILRTIITTNIVAIMSHPNMEVILRNLFSLFALAILIPLICRPLMFWIIKHTPEGRPVKDGYIYIIITMVFGLGVLSVKIDQEFILGAFILGLSVPEGPPLGSALVKKLQFFGPTFFLPIFVTTSVLKADFSMDISSFVMVSIGSVILVTHLVKITICFITALFCKMPITDALCLALILNTKGVVEVGIYNCLFDNNILDGQSYGVLMISVIITASIMQWSVKLLYDPSRKYGGYQKRSIMSLKGNSEVRILITLQKQNHISAAIDFLDLSCPTHENQITVDVLHVIELVGRALPLFIPHCLQQQASRSASHRSYSDDIILAFDMYEHHNADAVTINTYTAISPANLIFEDVCNLALDKVASIIILPFHIRWSSDGVVESNDKKILRPLNQRVLEIAPCSVGILVTRANSIPKATTTSEYSTARLAVIYLGGNDDDEEVLCLAKRSMNNPRINLVVYHLVGKDCKGDLEQLMVNDDDDDQVLQEIIHATNVRYQKIFTKNGSQTACFLREVVNQHDYFIVGRRHETHSPQTDGLTDWIEFPELGAIGDFLASPDLNSRASILVVQQQLSHKNEHKSWIL 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02964 802 Gene3D - 54 455 IPR038770 -
Trre5g02964 802 PANTHER CATION/H + ANTIPORTER 30 790 - -
Trre5g02964 802 Pfam Sodium/hydrogen exchanger family 60 440 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02964 Trre-Chr5 23866398 23868974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02964 20 790 Antiporter Super Family AT5G22900 33.905 2.22e-144 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02964 K26731 - mtr:11420455 1033.48