Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02949 ATGGGTTTTGAGCCAAAAATAAGGATGATAGTAGAACAAATGGACATGCCTCCTGCAGGTGTCAGACAGACTACGCTGTTCAGTGCCACTTTTCCAAATGAAATACAGAGGCTAGCCTCTGATTTCCTTTCAAGTTATATTTTTCTGGCTGTTGGAAGAGTGGGATCAAGTACCGATTTGATTGACCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGCCATCCCATGGACCTTCTTCATGCACAGAGAGCAAATGGTGTACAAGGAAAGCAAGCTTTGACCTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCTCTGGAACACTGGTTGTGTCTTAATAATTTCCCAGCAACTACTATTCACGGTGACAGGACTCAGCAGGAAAGAGGAGCAGCATTGAGATTATTTAAAAGTGGCAACACCCTGATATTGGTTGCCATGACGGGGAGAGCAGAAAAGAAAGGTCTTGCAACAACATTCTTTAATGAAAACAATGCATCCCTAGCAAGGTCTCTACAAAATTGGATGCAAGAAGCAAATCAAGAAGTAATTGCTTGGCTCTCGCGGTTCGCTGCACGATCATCCTTTGGTGGAGGAAAGAACCGTCGATCAGGAGGCCGATTTGGTGGTCGCGACTTTCGAAGAGATGGTTCTTTTAATAGGGGTGATCCTGATTACCATGGTGCAGAAAATAGCAGTGGTGGATATGGGGCTTCTGGTGGAGGATATGGTTGGTATGCAGGAAATAGCACCGGTCCTGGGGTGACCAGTGTGTTGGACTGA 792 0.4508 MGFEPKIRMIVEQMDMPPAGVRQTTLFSATFPNEIQRLASDFLSSYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHPMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRTQQERGAALRLFKSGNTLILVAMTGRAEKKGLATTFFNENNASLARSLQNWMQEANQEVIAWLSRFAARSSFGGGKNRRSGGRFGGRDFRRDGSFNRGDPDYHGAENSSGGYGASGGGYGWYAGNSTGPGVTSVLD 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02949 263 Gene3D - 52 150 IPR027417 -
Trre5g02949 263 Gene3D - 151 198 IPR027417 -
Trre5g02949 263 MobiDBLite consensus disorder prediction 199 239 - -
Trre5g02949 263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 171 IPR027417 -
Trre5g02949 263 Pfam Helicase conserved C-terminal domain 91 150 IPR001650 -
Trre5g02949 263 MobiDBLite consensus disorder prediction 208 226 - -
Trre5g02949 263 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 149 - -
Trre5g02949 263 Gene3D - 1 51 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02949 Trre-Chr5 23682997 23686713 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02949 16 178 Eukaryotic Initiation Factors Gene Family AT3G19760 22.959 3.73e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02949 K11594 - gmx:100781743 351.673