Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02947 ATGCGATCTTCATGGGCTGATTTGGCTGCAAATTCTGCGGCTGAAAATGCACCACCACCAACTTCTGCTGCTAACAACAATGCTACCAACAACACTCAACCTCCTTCTCGACCTGTTTATGTTCCTCCTCATCTGAGGAACCGTGGACCAACAGCACCAGCACCAGCTTCATCCGAGAGATTTTCTGCTCCCACTGCTTTTGATAATTCCGGATCGCGGTGGGCGCCGCCTCCGAGAAACGATTATCGTGGTCGTGGTGGTGGTGGTGGTTTTGGGAATAGGACTGGTGGTGGTGGTGGTTGGGATCGGCGTGAGGCGAATCCGTTTGCGGATCAGGATGATTCCGAAGAGCCTATTACTCAAGAGGAGCAGGAAAGTACAGGGATTAACTTTGATGCTTATGAGGATATTCCGGTGGAGACTAGCGGTGGGAATGTTCCTCCGCCGGTGAATACTTTTGCTGAGATTGACTTGGGTGAAGCACTTAATCAGAATATTAGGCGATGCAAATATGTGAAGCCGACCCCTGTTCAGCGGCATGCAATACCGATATCTCTTGCAGGAAGGGATTTGATGGCTTGTGCCCAGACCGGTTCTGGAAAGACTGCTGCTTTTTGTTTTCCGATTATCAGTGGAATTATGACTGGCCAACCTGCGCAGAGGCCACCTCGTGGGGTGCGTACCGTGTGTCCACTTGCGCTTGTTCTCTCGCCAACTAGGGAGCTATCGATGCAGATACACGAAGAGGCTAGGAAGTTTTCATATCAAACTGGGGTTAGGGTGGTGGTTGCTTATGGAGGAGCTCCAATAAACCAGCAGCTACGAGAGCTTGAGAGAGGGGTAGACATTCTCGTCGCAACTCCAGGAAGACTAGTAGATTTGTTGGAAAGGGCTAGAGTTTCACTCTCATTGATTAGGTATCTGGCCTTAGACGAGGCAGATAGGATGCTGGATATGGGTTTTGAGCCACAGATAAGGAAGATAGTAGAACAAATGGACATGCCTCCGGCAGGTGTCAGACAGACTATGCTGTTCAGTGCCACTTTCCCAAAAGAGATACAGAGACTAGCCTCTGATTTCCTTTCAAATTATATTTTTCTGGCTGTTGGAAGAGTGGGATCAAGTACCGATTTGATTGACCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGCCATCTCATGGACCTTCTTCATGCACAGAGAGCAAATGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCTCTGGAACACTGGCTGTGTCTTAATAATTTCCCAGCAACTACTATTCACGGTGACAGGACTCAACAGGAAAGAGAAGCAGCATTGAGATCATTTAAAAGTGGCAACACCCCCATATTGGTTGCCACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTAGCACATGTAGTTAACTTTGACCTTCCCAATGATATTGATGATTATGTGCACCGTATTGGAAGGACGGGGAGAGCAGGAAAGAAAGGTCTTGCAACTGCATTCTTTAATGAAAACAATACATCTCTAGCAAGGTCTTTACAAGATTTGATGCAAGAAGCAAATCAAGAAGTACCTGCTTGGCTCTCGCGGTTTGCTGCACGATCATCCTTTGGTGGAGGAAAGAATCGTCGATCAGGAGGCCGATTTGGTGGCCGTGACTTTCGAAGAGATGGTTCTTTTAATAGGGGTGGTTCTGATTACCATGGTGCAGGAAATAGTAGTGGTGGATATGGGGCTTCTGGTGGGTATGGTGGAGGATATGGTGGTGGGTATGCAGGAAATAGCGCCGGTCCTGGGGTGACCAGTGCATGGGACTGA 1857 0.4787 MRSSWADLAANSAAENAPPPTSAANNNATNNTQPPSRPVYVPPHLRNRGPTAPAPASSERFSAPTAFDNSGSRWAPPPRNDYRGRGGGGGFGNRTGGGGGWDRREANPFADQDDSEEPITQEEQESTGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQRPPRGVRTVCPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLSLIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRTQQEREAALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNTSLARSLQDLMQEANQEVPAWLSRFAARSSFGGGKNRRSGGRFGGRDFRRDGSFNRGGSDYHGAGNSSGGYGASGGYGGGYGGGYAGNSAGPGVTSAWD 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02947 618 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 182 367 IPR014001 -
Trre5g02947 618 Pfam Helicase conserved C-terminal domain 391 506 IPR001650 -
Trre5g02947 618 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 232 522 IPR027417 -
Trre5g02947 618 MobiDBLite consensus disorder prediction 550 588 - -
Trre5g02947 618 CDD SF2_C_DEAD 379 515 - -
Trre5g02947 618 Gene3D - 106 369 IPR027417 -
Trre5g02947 618 MobiDBLite consensus disorder prediction 559 575 - -
Trre5g02947 618 Gene3D - 370 549 IPR027417 -
Trre5g02947 618 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 378 545 IPR001650 -
Trre5g02947 618 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 119 545 - -
Trre5g02947 618 SMART ultradead3 170 382 IPR014001 -
Trre5g02947 618 SMART helicmild6 425 506 IPR001650 -
Trre5g02947 618 FunFam ATP-dependent RNA helicase RhlB 370 549 - -
Trre5g02947 618 MobiDBLite consensus disorder prediction 1 129 - -
Trre5g02947 618 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 151 179 IPR014014 GO:0003724
Trre5g02947 618 CDD DEADc_DDX3_DDX4 152 373 IPR044763 GO:0003724|GO:0005524
Trre5g02947 618 Pfam DEAD/DEAH box helicase 175 356 IPR011545 GO:0003676|GO:0005524
Trre5g02947 618 Coils Coil 516 536 - -
Trre5g02947 618 FunFam Probable ATP-dependent RNA helicase DDX4 112 369 - -
Trre5g02947 618 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02947 Trre-Chr5 23670091 23676116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02947 140 538 Eukaryotic Initiation Factors Gene Family AT3G19760 32.500 1.17e-64 216