Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02943 ATGGGAGAAATACATAGTGAGGTAGTAACATGGGAGAAGGAGGAGGAAGAAAAAGAAGAAGAACAAGCTCAAGTAGAAATATGGAAATACATCTTTGGTTTTGTTGAACTTTCAGTGGTGAAATGTGCAATTGAACTTGGCATAGCTGATGCCATTGAAAAACACAAAAAACCCATGTCACTAATAGAGTTATCAACAACTCTAAAATGTGACCCTTCATATCTTAACCGCATCATGAGATTCCTAGTACATAGAAAAATATTCAAAACCATACATACCAACCATGATACCTATCCTAGTTATGTCCAAACACCACTTTCTCGCCGTTTGATTCGAAACGGCGAGAAAAACATGACTGCTTTTCTTTTACTAGAGAGCAGTCATGTTATGGTAGCACCTTGGCTTAGTTTAAGTTGTCGTGTTTTGGTTAATGGTAATCCTTCTTTTGAGAAGGTTCATGGTGAAGATGTGTGGCGTTATGCTGCTTCAAATCATGATCATAGTAATCTTATTAATGATGCTATGGCTTGTGATGCTAAAGTTGTTGTGCCAGCAATTGTTGAAGGTTGTAGTGAGGTTTTTGATGGTGTTGGTTCCTTGGTGGATGTTGGTGGAGGGAATGGTACCACCATGAGTATCCTTGCTAAGGCTTTTCCTTGGATACATGGAATTAATTTTGATCTTCCTCATGTCATTGATGTGGCGCCAAAGTATGATGGGGTGGAACATGTGGCAGGTGACATGTTTGCAAGTGTTCCTAAAGCTGATGCTGTAATTATTAAGTGGGTTTTACATGATTGGGGGGATGATGAGTGCATCCAAATCCTGAAAAAATGTAGGGAAGCTATTCCAAAAGAAAAAGGAAAAGTTATTATTGTGGAAGCAGTTATTGAAGAAGAAGGAGGAAAACACAACAACTACAAAGATGTTGGATTAATGTTAGATATGGTGATGATGGCACACACTAACATTGGCAAAGAAAGGACACTAAAAGAATGGGACTATGTTATCAAAATGGCTGGATTCAAGGCATTCACTGTGATATCTATCAATGCTGTGCAGTGTGTAATTTTAGCCTCATGCTAA 1086 0.384 MGEIHSEVVTWEKEEEEKEEEQAQVEIWKYIFGFVELSVVKCAIELGIADAIEKHKKPMSLIELSTTLKCDPSYLNRIMRFLVHRKIFKTIHTNHDTYPSYVQTPLSRRLIRNGEKNMTAFLLLESSHVMVAPWLSLSCRVLVNGNPSFEKVHGEDVWRYAASNHDHSNLINDAMACDAKVVVPAIVEGCSEVFDGVGSLVDVGGGNGTTMSILAKAFPWIHGINFDLPHVIDVAPKYDGVEHVAGDMFASVPKADAVIIKWVLHDWGDDECIQILKKCREAIPKEKGKVIIVEAVIEEEGGKHNNYKDVGLMLDMVMMAHTNIGKERTLKEWDYVIKMAGFKAFTVISINAVQCVILASC 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02943 361 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 28 361 IPR016461 GO:0008168
Trre5g02943 361 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 116 357 IPR029063 -
Trre5g02943 361 FunFam O-methyltransferase family protein 112 360 - -
Trre5g02943 361 Gene3D - 9 110 IPR036388 -
Trre5g02943 361 CDD AdoMet_MTases 200 293 - -
Trre5g02943 361 Gene3D Vaccinia Virus protein VP39 112 359 IPR029063 -
Trre5g02943 361 PANTHER O-METHYLTRANSFERASE 37 342 IPR016461 GO:0008168
Trre5g02943 361 FunFam O-methyltransferase family protein 11 110 - -
Trre5g02943 361 SUPERFAMILY "Winged helix" DNA-binding domain 17 114 IPR036390 -
Trre5g02943 361 Pfam Dimerisation domain 39 83 IPR012967 GO:0046983
Trre5g02943 361 Pfam O-methyltransferase domain 137 343 IPR001077 GO:0008171
Trre5g02943 361 PIRSF O-mtase 6 361 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02943 Trre-Chr5 23603556 23605955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02943 40 348 Monolignol Biosynthesis Gene Families AT5G54160 35.331 8.40e-63 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02943 K22588 - gmx:100782951 461.455