Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02938 ATGAGAGGAAGAAGCTACACTCCATCTCCACCACCACCACGTTACAGCAGAAGAGGCGGTGGAAGAAGTCCAAGTCCCCGTCGTCGTTACGCTCCCCGTCAAAGCGATCTACCTACCAGTCTTCTTGTTCGTAACCTTCGCCATGATTGTAGACCTGAAGATCTTCGCAGACCTTTTGGTCAATTCGGTCCTTTAAAAGACATTTATCTCCCTAAAGATTATTACACTGGACAGCCGCGTGGATTTGGTTTTATCCAATTTGTGGATCCTGCTGATGCTGCCGATGCTAAATATCATATGGATGGTCAAGTTCTTCTTGGTAGGGAGCTGACTGTTGTTTTTGCTGAGGAAAATAGAAAGAAGCCTACTGAGATGAGGGTCAGAGAGAGAAGTGGTCGGTATTCTGATAGAAGAAGGTCTCCTCCACGCTACTCTCGTTCGCCCCGCTATTCCCGGTCTCCACCTCGCCACAGATCTCGCTCTCGTGGAAGTCGTGACTATTATTCCCCTCCTCCTAAACGAAGGGAATATTCAAGATCTCTATCTCCTGAGGATAGAAGGCACAGTCGAGAAAGATCACCGCATAGCAGAGAGAGGTCATACTCACGCTCTCCACCGAAAAATGGGGACGCGAGAAGCCGTAGTCAGAGTCCAGTGAAAAGCCCAATTCCAAGCAGAAGTCCAAGTCCGGATGGTGATGTAAGGGAATCGCCTCGCAGTAGGTCCCCCAGTCAGTGA 738 0.4932 MRGRSYTPSPPPPRYSRRGGGRSPSPRRRYAPRQSDLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFIQFVDPADAADAKYHMDGQVLLGRELTVVFAEENRKKPTEMRVRERSGRYSDRRRSPPRYSRSPRYSRSPPRHRSRSRGSRDYYSPPPKRREYSRSLSPEDRRHSRERSPHSRERSYSRSPPKNGDARSRSQSPVKSPIPSRSPSPDGDVRESPRSRSPSQ 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02938 245 MobiDBLite consensus disorder prediction 1 37 - -
Trre5g02938 245 MobiDBLite consensus disorder prediction 206 222 - -
Trre5g02938 245 MobiDBLite consensus disorder prediction 1 17 - -
Trre5g02938 245 MobiDBLite consensus disorder prediction 119 143 - -
Trre5g02938 245 MobiDBLite consensus disorder prediction 119 245 - -
Trre5g02938 245 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 38 229 - -
Trre5g02938 245 MobiDBLite consensus disorder prediction 160 205 - -
Trre5g02938 245 FunFam Serine/arginine-rich SC35-like splicing factor SCL30A 31 147 - -
Trre5g02938 245 SMART rrm1_1 40 113 IPR000504 GO:0003723
Trre5g02938 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Trre5g02938 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 110 IPR000504 GO:0003723
Trre5g02938 245 SUPERFAMILY RNA-binding domain, RBD 36 144 IPR035979 GO:0003676
Trre5g02938 245 Gene3D - 8 130 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02938 Trre-Chr5 23547996 23550112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02938 39 147 Eukaryotic Initiation Factors Gene Family AT4G34110 29.730 6.43e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02938 K12900 - gmx:100775883 277.33