Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02936 ATGAATTATCTTCGTCCTTCTGTCAAACGTGGTCAGATCGCTCCTGATGAAGAAGATCTCATCCTCCGTCTTCACCGTCTCCTCGGCAACAGGTGGTCATTGATAGCTGGGAGAATTCCAGGAAGAACTGATAATGAGATAAAGAATTATTGGAACACACATCTTAGTAAGAAACTCATTAATCAAGGGATTGATCCAAGAACTCACAAGCCTCTTAACAATATAAATAATCCATCTACTTCTTCAATAATCCCAAATACTAATCAACAAATCACTACTACTCCTTTCACATCTTCAGCTACTCAAAATCATAATCATTATTATCACCCCTCACATGATGATCATCATCATTTAGCTCAATATCATAATCAATATTATCCACAACAAGAAGAACAAGCTAAGGAAGTTAATGATGATGCTAATTGTGATCACTTAATTAATGATGTTTCTGCAATGGATAAAGCAGCCAACAACAACAAAGGGGATTGCGATAAAAATAGTACCGATTATTGTTGCGATGATGTGTTTACTTCATTCTTGGATTCATTGATCAATGATGAGGCTTTTGCTGCACATCGATCGGAGAATGATCCAGCTGATAATCCATTGATTTCATCTGCTGCACCATCAGTTTTGTGGGAATCACCACTTATGTATACTAATTTCACTCAAAACAAAGACTCAACCAACACTGGCAAGCTTCATGATGCATAG 714 0.3697 MNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLINQGIDPRTHKPLNNINNPSTSSIIPNTNQQITTTPFTSSATQNHNHYYHPSHDDHHHLAQYHNQYYPQQEEQAKEVNDDANCDHLINDVSAMDKAANNNKGDCDKNSTDYCCDDVFTSFLDSLINDEAFAAHRSENDPADNPLISSAAPSVLWESPLMYTNFTQNKDSTNTGKLHDA 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02936 237 SMART sant 9 57 IPR001005 -
Trre5g02936 237 Pfam Myb-like DNA-binding domain 14 55 IPR001005 -
Trre5g02936 237 CDD SANT 15 55 IPR001005 -
Trre5g02936 237 Gene3D - 14 82 - -
Trre5g02936 237 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 128 - -
Trre5g02936 237 SUPERFAMILY Homeodomain-like 1 62 IPR009057 -
Trre5g02936 237 ProSiteProfiles Myb-like domain profile. 5 55 IPR001005 -
Trre5g02936 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 59 IPR017930 -
Trre5g02936 237 FunFam transcription repressor MYB5-like 14 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02936 Trre-Chr5 23539241 23540228 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02936 1 186 MYB Transcription Factor Family AT3G13540 48.148 7.34e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre5g02936 Myb_DNA-binding 5.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02936 K09422 - tcc:18598703 206.068