Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02935 ATGAGGAATCCTTCATCATCAACAAATCATGAATCCAAATCAACAACAACAACAATAAATTCAAATAAGAAGAAGCAGAAAATCAACAACAACAACAGTAACAATGGAAGCAGTAGCAGTACTAGTAGGACCACCACCACAACAACAACTACACCTTGTTGCAGTAAAATAGGATTAAAGAGAGGACCATGGACAGCTGAAGAAGATGAAGTATTATCAGAATACATTAAGAAAGAAGGTGAAGGTCGTTGGAGAACTCTTCCCAAACGTGCTGGTCTTCTTCGTTGTGGTAAAAGTTGTCGTCTCCGTTGGATGAATTATCTTCGTCCTTCTGTCAAACGTGGTCAGATCGCTCCTGATGAAGAAGATCTCATCCTCCGTCTTCACCGTCTCCTCGGCAACAGGTGGTCATTGATAGCTGGGAGAATTCCAGGAAGAACTGATAATGAGATAAAGAATTATTGGAACACACATCTTAGTAAGAAACTCATTAATCAAGGGATTGATCCAAGAACTCACAAGCCTCTTAACAATATAAATAATCCATCTACTTCTTCAATAATCCCAAATACTAATCAACAAATCACTACTACTCCTTTCACATCTTCAGCTACTCAAAATCATAATCATTATTATCACCCCTCACATGATGATCATCATCATTTAGCTCAATATCATAATCAATATTATCCACAACAAGAAGAACAAGCTAAGGAAGTTAATGATGATGCTAATTGTGATCACTTAATTAATGATGTTTCTGCAATGGATAAAGCAGCCAACAACAACAAAGGGGATTGCGATAAAAATAGTACCGATTATTGTTGCGATGATGTGTTTACTTCATTCTTGGATTCATTGATCAATGATGAGGCTTTTGCTGCACATCGATCGGAGAATGATCCAGCTGATAATCCATTGATTTCATCTGCTGCACCATCAGTTTTGTGGGAATCACCACTTATGTATACTAATTTCACTCAAAACAAAGACTCAACCAACACTGGCAAGCTTCATGATGCATAG 1026 0.3752 MRNPSSSTNHESKSTTTTINSNKKKQKINNNNSNNGSSSSTSRTTTTTTTTPCCSKIGLKRGPWTAEEDEVLSEYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLINQGIDPRTHKPLNNINNPSTSSIIPNTNQQITTTPFTSSATQNHNHYYHPSHDDHHHLAQYHNQYYPQQEEQAKEVNDDANCDHLINDVSAMDKAANNNKGDCDKNSTDYCCDDVFTSFLDSLINDEAFAAHRSENDPADNPLISSAAPSVLWESPLMYTNFTQNKDSTNTGKLHDA 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02935 341 FunFam Myb transcription factor 58 114 - -
Trre5g02935 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 109 163 IPR017930 -
Trre5g02935 341 Gene3D - 61 113 - -
Trre5g02935 341 ProSiteProfiles Myb-like domain profile. 56 108 IPR001005 -
Trre5g02935 341 CDD SANT 63 108 IPR001005 -
Trre5g02935 341 SUPERFAMILY Homeodomain-like 58 155 IPR009057 -
Trre5g02935 341 Gene3D - 118 186 - -
Trre5g02935 341 MobiDBLite consensus disorder prediction 1 53 - -
Trre5g02935 341 ProSiteProfiles Myb-like domain profile. 109 159 IPR001005 -
Trre5g02935 341 CDD SANT 119 159 IPR001005 -
Trre5g02935 341 Pfam Myb-like DNA-binding domain 61 108 IPR001005 -
Trre5g02935 341 Pfam Myb-like DNA-binding domain 118 159 IPR001005 -
Trre5g02935 341 FunFam transcription repressor MYB5-like 118 186 - -
Trre5g02935 341 SMART sant 60 110 IPR001005 -
Trre5g02935 341 SMART sant 113 161 IPR001005 -
Trre5g02935 341 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 51 253 - -
Trre5g02935 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 108 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02935 Trre-Chr5 23538929 23540228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02935 39 290 MYB Transcription Factor Family AT3G13540 54.118 4.71e-87 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre5g02935 Myb_DNA-binding 2.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02935 K09422 - tcc:18598703 313.538