Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02928 ATGGATGAAACAATGGCGGCAAGATATTGGTGTCATGCTTGTTCTCAAATAGTTAGTCCCGTAATGGGAATGGAGATGAAATGCCCAGTTTGCCAAGGTGGATTTATTGAAGAAATGAGCAGTGCCACTGGTATTAGTGATTTGCAAAATATACCAGAACCTGATTTTGGATCGGATCGTTCTCCCTCTCTTTGGGCACCAATCTTGCTAGGTATGATGGGCAATCCGCGGCTTCGTCGAAGATTGAGACGAATAGAGCTTGAAGACGACTATGATAGTAGTAATCGTGATGATGATGATAATGGTGGTGTAGGACATTATGATCGAGAGCTTGAGTCCATCCTTCGAAGAAGAAGAAGAAGCTCTGCTACCATTCAACAATTGCTCCAAGGCATAAGAGCTGGACTGACATCTGAACCACAAGAGAATACTATTGAAAGTGATGACCATGTTAGGGAAAGAGAAAGAGAAAGAGAAAGAGAGCATGTAATCTTGATTAACCCTTTCAGTCAGACTATTATAGTTCAAGGTTCCTATGATTCAAACCGGGATCAAAGTGATAATCATAACCCCATTGGGTCTCTAGGTGACTATTTTGTAGGGCCTGGTTTGGATCTATTGTTGCAACATTTGTCTGAGAATGACCCTAATAGATATGGAACTCCGCCTGCACCGAAGGAAGCCGTTGAAGCTCTACCTACTGTGAAGATCAATGAGAATTTGCAATGTTCTGTCTGTTTGGATGATTTTGAAGTTGGTACTGAAGCTAAAGAGATGCCATGTAAACATAGGTTTCATAGTGCTTGTATCCTGCCCTGGCTGGAGCTTCATAGTTCTTGTCCAGTTTGCAGGTCTCAATTGCGAGTGGATGAATCTAAGCAAGATTCTGATGTTTCAAGGAACCACAGAAATCAAAGGGAGGATGCAAATATCGGACATGCCAATGCCAATGCTGAAGGAGATAGTGAAGGGAGAAGTCCAAGTGGGGGTAGAAGATTCTCATTTCCATGGCCTTTCAATGGATTATTTTCTTCATCATCTTCTAGTTCCAGTTCAAATGGAAATGGTACTCAATCAGAAAGAAACTGA 1089 0.4187 MDETMAARYWCHACSQIVSPVMGMEMKCPVCQGGFIEEMSSATGISDLQNIPEPDFGSDRSPSLWAPILLGMMGNPRLRRRLRRIELEDDYDSSNRDDDDNGGVGHYDRELESILRRRRRSSATIQQLLQGIRAGLTSEPQENTIESDDHVREREREREREHVILINPFSQTIIVQGSYDSNRDQSDNHNPIGSLGDYFVGPGLDLLLQHLSENDPNRYGTPPAPKEAVEALPTVKINENLQCSVCLDDFEVGTEAKEMPCKHRFHSACILPWLELHSSCPVCRSQLRVDESKQDSDVSRNHRNQREDANIGHANANAEGDSEGRSPSGGRRFSFPWPFNGLFSSSSSSSSSNGNGTQSERN 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02928 362 SMART ring_2 243 283 IPR001841 -
Trre5g02928 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 289 IPR013083 -
Trre5g02928 362 MobiDBLite consensus disorder prediction 343 362 - -
Trre5g02928 362 ProSiteProfiles Zinc finger RING-type profile. 243 284 IPR001841 -
Trre5g02928 362 MobiDBLite consensus disorder prediction 132 155 - -
Trre5g02928 362 SUPERFAMILY RING/U-box 232 294 - -
Trre5g02928 362 Pfam Ring finger domain 242 284 IPR001841 -
Trre5g02928 362 MobiDBLite consensus disorder prediction 291 309 - -
Trre5g02928 362 MobiDBLite consensus disorder prediction 291 334 - -
Trre5g02928 362 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 142 287 - -
Trre5g02928 362 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Trre5g02928 362 CDD RING-H2_RNF126-like 242 284 - -
Trre5g02928 362 FunFam E3 ubiquitin-protein ligase RING1-like 210 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02928 Trre-Chr5 23424761 23425849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02928 160 290 C3H Transcription Factor Family AT1G26800 39.098 5.06e-24 96.3