Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02901 ATGTGTTATCTTCTATACTCTATCAATACCGTACTGAGGCAGCGAGCAGCTAACAGAGGGTGCCTCTTGGTAAGGCAATCTTTTTTTCATGATGACTCGAAGAATTTCATTGATGTTGGAGGTGGAGTAACAGGAGCTCGAGGTTTTCATTCCAGTTTTCGTCTTACACAGGGAGGATTGTCTCTTAATATGGATGTGTCCACGACGATGATCGTAAAACCTGGACCTGTAATTGATTTTCTCCTAACCAACCAGAGTGTGAGGGAACCTCGATATATTGACTGGGCAAAGGCCAAGAGAATGCTTAAAAATTTAAGAGTTCGTGCTACGCATCGTAATCAAGAATTCAAAATTTCTGGCTTGAGTGAGAAACCCTGCATTCAACAACTTTTTAGTATGAAGATGAAAAATGGAGAAGACAGTAATGTGGAGCAGACAGTCGATGTTACTGTATACGAGTATTTTGCTAAACACCGTGGCATGGAGCTGACCTCTTCTGCTTACCTTCCATGTCTTGATGTTGGGAAGCCAAATCGGCCCATCTTCTTACCCCTGGAGCTATGTTCACTTGTTCCCCTCCAGCGGTATACAAAGGCATTATCTCCTGTGCAAAGAGCATCTTTAGTAGAAAAATCACGCCAAAAGCCTCAAGAAAGAATCAAAATTCTGACAAATGCTATTGGAAATTCTTGCTATGATGATGATACTGTTCTTGCGGCATGTGGCATTTCCATTGATAAACAATTCACTCCAGTTGAAGGTCGAATTCTGGAGACACCAAAGTTGAAGGTCGGTAAGAATGAGGACTGCTTCCCTAATAATGGAAGGTGGAACTTTAAAAACAAGACACTTCTACAACCATCACATATTGAATATTGGGCTGTTGTCAACTTTTCTGCACAATGTGATACTAGTTACATAACAAGGGAGCTGATCAAATGTGGAATGAGCAAGGGAATTAATATTGAACGGCCATATACTTTAATAGAGGAAGAAGCACAAATGAGGAGATCTAACCCGGTTGCAAGGGTTGAAAAGATGTTTGACCTGCTGACATCAAAACTTACTAGAGACCCAAAGTTGATTCTTTGTGTCTTGCCAGAGAGGAAAAACTGTGACATCTATGGGCCTTGGAAAAGGAAGTGCCTGAGTGAAGTTGGGGTTGTCACACAGTGTATTTCCCCTCTCAAGATCACTGATCAGTACCTTACTAACGTACTTCTTAAAATCAATTCTAAGCTTGGAGGAATAAATTCTTTGCTGGCAATTGAGCATTCTGGGCATCTTCCCTTGATTAAAGATACCCCAACGATGATTTTAGGGATGGATGTCTCTCATGGTTCCCCTGGCCGATCAGATATTCCATCAATAGCAGCTGTTGTTGGATCTCGATGTTGGCCTCTAATTTCAAGGTATAGAGCATCTGTGAGATTGCAGTCACCTAAGGTGGAGATGATTGATGCTCTATTCAAGCCTTTGGATAATGGGAATGATGATGGTATTATCAGGGAATTGCTTCTAGATTTCTATAGTTCAAGTAATGGACACAGACCAGCTCAAATTATTCTCTTCAGGGATGGAGTTAGTGAATCACAATTTCAACAGGTTTTGAATATAGAGCTTAACCAGATAATAAAGGCCTATAAATATCTTGGGAAGTTTGATGTTCCCAAGTTCACTGTAATTGTGGCACAGAAGAATCACCATATAAAGCTGTTTCAAGCTAACGCTCTGGAAAATGTTCCTCCTGGGACAGTGGTCGACACAAAAATTGTGCATCCAAGAAATTACGATTTCTACATGTGTACTCATGCGGGAATGCTTGGAACGTCTAGGCCTGTACATTATCATGTGTTGCTTGATGAAATCGGATTCTCACCGGATGGCTTACAAAATTTGATCAATTCACTGTCTTATGTAAACCAAAGGAGCACCACTGCAACCTCAATTGTGGCGCCTATATCCTATGCCCACCATGCTGCAGCTCAAATGGGACAGTTTCTGAAATTCGATGAGTTATCAGAAGCATCTTTGAGTCCTGATTCAGAGGGAAACATCCCCATTCCAGAGCTTCCAAGGTTGCATAAAGATGTCAGGACCTCCATGTTCTTTTGTTGA 2118 0.4131 MCYLLYSINTVLRQRAANRGCLLVRQSFFHDDSKNFIDVGGGVTGARGFHSSFRLTQGGLSLNMDVSTTMIVKPGPVIDFLLTNQSVREPRYIDWAKAKRMLKNLRVRATHRNQEFKISGLSEKPCIQQLFSMKMKNGEDSNVEQTVDVTVYEYFAKHRGMELTSSAYLPCLDVGKPNRPIFLPLELCSLVPLQRYTKALSPVQRASLVEKSRQKPQERIKILTNAIGNSCYDDDTVLAACGISIDKQFTPVEGRILETPKLKVGKNEDCFPNNGRWNFKNKTLLQPSHIEYWAVVNFSAQCDTSYITRELIKCGMSKGINIERPYTLIEEEAQMRRSNPVARVEKMFDLLTSKLTRDPKLILCVLPERKNCDIYGPWKRKCLSEVGVVTQCISPLKITDQYLTNVLLKINSKLGGINSLLAIEHSGHLPLIKDTPTMILGMDVSHGSPGRSDIPSIAAVVGSRCWPLISRYRASVRLQSPKVEMIDALFKPLDNGNDDGIIRELLLDFYSSSNGHRPAQIILFRDGVSESQFQQVLNIELNQIIKAYKYLGKFDVPKFTVIVAQKNHHIKLFQANALENVPPGTVVDTKIVHPRNYDFYMCTHAGMLGTSRPVHYHVLLDEIGFSPDGLQNLINSLSYVNQRSTTATSIVAPISYAHHAAAQMGQFLKFDELSEASLSPDSEGNIPIPELPRLHKDVRTSMFFC 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02901 705 Pfam PAZ domain 78 208 IPR003100 GO:0005515
Trre5g02901 705 ProSiteProfiles Piwi domain profile. 361 669 IPR003165 GO:0003676
Trre5g02901 705 SUPERFAMILY Ribonuclease H-like 345 667 IPR012337 -
Trre5g02901 705 SUPERFAMILY PAZ domain 69 230 IPR036085 GO:0005515
Trre5g02901 705 CDD PAZ_argonaute_like 74 191 - -
Trre5g02901 705 SMART Piwi_a_2 361 669 IPR003165 GO:0003676
Trre5g02901 705 Pfam Argonaute linker 1 domain 24 72 IPR014811 -
Trre5g02901 705 Pfam Argonaute linker 2 domain 218 263 IPR032472 -
Trre5g02901 705 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 8 671 - -
Trre5g02901 705 FunFam Protein argonaute 7 69 196 - -
Trre5g02901 705 Gene3D - 256 422 - -
Trre5g02901 705 Gene3D paz domain 68 196 - -
Trre5g02901 705 SMART PAZ_2_a_3 75 214 IPR003100 GO:0005515
Trre5g02901 705 Gene3D - 428 705 IPR036397 GO:0003676
Trre5g02901 705 Pfam Mid domain of argonaute 272 350 IPR032473 -
Trre5g02901 705 ProSiteProfiles PAZ domain profile. 99 192 IPR003100 GO:0005515
Trre5g02901 705 FunFam Protein argonaute 3 429 705 - -
Trre5g02901 705 Pfam Piwi domain 361 669 IPR003165 GO:0003676
Trre5g02901 705 CDD Piwi_ago-like 236 663 IPR045246 -
Trre5g02901 705 SMART DUF1785_2 22 74 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02901 Trre-Chr5 23218424 23224766 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02901 8 705 Eukaryotic Initiation Factors Gene Family AT5G43810 37.007 1.18e-138 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02901 K11593 - gmx:100778875 1168.3