Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02899 ATGGTGAGTGTATCTGGCTTTGAAGAAGTTGTTGAGCCACCGGCTTTACCTCCATCACCTCCTGATGTGCTTCCTGATATGGAAACAGAAGAAATAGCTCTCCCAACCTATTCTATTATCAGTAGGCCTGGTGTTGGGACCATAGGGAAGCGCATAGCTTTGCTTGTAAACCTCTTCAAAGTTGCTGCTGATGCTACAGATGCAACCTTTTTCCAGTATAGTGTTTTCCAGGTTACTATCACTTCGGAAGATAAAAGAGTCATCGAAAACAAGGGCATCGGGAGAAAACTAATTGATAGGCTTCACCAAACTTACTCTTCTGAACTTGGCGGCAAAAGCTTTGTGTATGATGGAGAAAGAACTTTGTACACAGTCGGTCCTCTTCCAGATAATAAATTTGAGTTCACAGTATTACTTGAGGAATCATTTTCCAAGCGCAGCAGTACTGAGTTTCCCGGTGCTGATGGAAGTCTTCATGGGGAAAATAAAAGGTCAAAACGTTCTTTTCCGCCAAAGGCATTCACAGTGGAGATATGTTTTGCTGCCAAAATACCCTTACAATCCATTGCTCTTTCCCTTAAAGGGATTGAGTCACATGCTAATTCTCAGGATGCATTGAGGGTGCTTGATACCGTACTGAGGCAGCGAGCAGCTAACAGAGGGCGTCTCTTGGTAAGGCAATCTTTTTTTCATGATGACTCGAAGAATTTCATTGATGTTGGAGGTGGAGTAACAGGAGTTCGAGGTTTTCATTCCAGTTTTCGTCTTACACAGGGAGGATTGTCTCTTAATATGGATGTGTCCACAACGATGATCGTAAAACCTGGACCTGTAATTGATTTTCTCCTAACCAACCTGAGTGTGAGGGAACCTCGTTATATTGACTGGGCAAAGGCCAAGAGAATGCTTAAAAATTTAAGAGTTCGCGCTACACATTGTAATCAAGAATTCAAAATTTCTGGCTTGAGTGAGAAACCATGCATTCAACAACTTTTTAGTATGAAGATGAAAAATGGAGAAGACAGTGCGGAGCAGACAGTTGATGTTACTGTATACGAGTATTTTGCTAAACACCGTGGCATTGAGCTGGCCTCTTCTGCTTACCTTCCATGTCTTGATGTTGGGAAGCCAAATCGGCCCATCTTTTTACCCCTGGAGCTATGTTCACTTGTTCCCCTCCAGCGGTATACAAAGGCATTATCTCCTGTGCAAAGAGCATCTTTAGTAGAAAAATCACGCCAAAAGCCTCAAGAAAGAATCAAAATTCTGACAAATGCTATAGGGAATTCTTGCTATGATGATGATGCTGTTCTTGCGGCATGTGGCATTTCTATCGATAAACAATTCACTCCAGTTGAAGGTCGAGTTCTGGAGACACCAAAGTTGAAGGTCGGTAAGAATGAGGACTGCTTCCCTAATAATGGAAGGTGGAATTTTAAAAACAAGACACTTCTACAACCATCACATATTGAATATTGGGCTGTTGTCAACTTTTCTGCACAATGTGATACTAGTTACATAACAAGGGAGCTGATCAAATGTGGAATGAGCAAGGGAATTAATATTGAACGGCCATATACTTTAATAGAGGAAGAAGTTCAAATGAGAAAATCTAACCCGGTTGCAAGGGTTGAAAAGATGTTTGACCTGCTGACATCAAAACTTACTAAAGAACCAAAGTTGATTCTTTGTGTCTTGCCAGAGAGGAAAAACTGTGACATCTATGGGCCTTGGAAAAGGAAGTGCCTGAGTGAAGTTGGGGTTGTCACACAGTGTATTTCCCCTCTCAAGATCACTGATCAGTACCTTACTAACGTACTTCTTAAAATCAATTCTAAGCTTGGAGGAATAAATTCTTTACTGGCAATTGAGCATTCTGGGCATCTTCCCTTAATTAAAGATACCCCAACGATGATTTTAGGGATGGATGTCTCTCATGGTTCCCCTGGCCGATCAGATATTCCATCAATAGCTGCTGTTGTTGGATCTCGATGTTGGCCTCTAATTTCGAGGTATAGAGCGTCTGTGAGATCACAGTCTCCTAAGGTGGAGATGATTGATGCTCTATTCAAGCCTTTGGATAATGGGAATGATGATGGTATTATCAGGGAATTGCTTCTAGATTTCTATAGTTCAAGTAATGGACACAAACCAGCTCAAATTATTCTCTTCAGGGATGGAGTTAGTGAATCACAATTTCAACAGGTTTTGAATATAGAGCTTAACCAGATAATAAAGGCCTATAAATATCTGGAGGAGGTTGATGTTCCCAAGTTCACTGTAATTGTGGCACAGAAGAATCACCATATAAAGCTGTTTCAAGCTAATGCTCTGGAAAACGTTCCTCCTGGGACAGTTGTCGACACAAAAATTGTGCATCCAAGAAATTATGATTTCTACATGTGTACTCATGCTGGAATGATTGGAACGTCTAGGCCTGTACATTATCATGTGTTGCTTGATGAAATCGGATTCTCGCCAGATGACTTGCAAAATTTGATCAATTCACTGTCTTACGTGAACCAACGGAGCACTACTGCAACCTCAATTGTGGCACCTATATCCTATGCCCACCATGCTGCAGCTCAAATGGGACAGTTTCTGAATTTCGACGAGTTATCAGAAGCGTCTTTGAGTCCCGATTCAGAGGGAAACATCCCCATTCCAGAGCTTCCAAGGTTGCATAAAAATGTCAGGACCTCCATGTTCTTCTGTTGA 2718 0.4157 MVSVSGFEEVVEPPALPPSPPDVLPDMETEEIALPTYSIISRPGVGTIGKRIALLVNLFKVAADATDATFFQYSVFQVTITSEDKRVIENKGIGRKLIDRLHQTYSSELGGKSFVYDGERTLYTVGPLPDNKFEFTVLLEESFSKRSSTEFPGADGSLHGENKRSKRSFPPKAFTVEICFAAKIPLQSIALSLKGIESHANSQDALRVLDTVLRQRAANRGRLLVRQSFFHDDSKNFIDVGGGVTGVRGFHSSFRLTQGGLSLNMDVSTTMIVKPGPVIDFLLTNLSVREPRYIDWAKAKRMLKNLRVRATHCNQEFKISGLSEKPCIQQLFSMKMKNGEDSAEQTVDVTVYEYFAKHRGIELASSAYLPCLDVGKPNRPIFLPLELCSLVPLQRYTKALSPVQRASLVEKSRQKPQERIKILTNAIGNSCYDDDAVLAACGISIDKQFTPVEGRVLETPKLKVGKNEDCFPNNGRWNFKNKTLLQPSHIEYWAVVNFSAQCDTSYITRELIKCGMSKGINIERPYTLIEEEVQMRKSNPVARVEKMFDLLTSKLTKEPKLILCVLPERKNCDIYGPWKRKCLSEVGVVTQCISPLKITDQYLTNVLLKINSKLGGINSLLAIEHSGHLPLIKDTPTMILGMDVSHGSPGRSDIPSIAAVVGSRCWPLISRYRASVRSQSPKVEMIDALFKPLDNGNDDGIIRELLLDFYSSSNGHKPAQIILFRDGVSESQFQQVLNIELNQIIKAYKYLEEVDVPKFTVIVAQKNHHIKLFQANALENVPPGTVVDTKIVHPRNYDFYMCTHAGMIGTSRPVHYHVLLDEIGFSPDDLQNLINSLSYVNQRSTTATSIVAPISYAHHAAAQMGQFLNFDELSEASLSPDSEGNIPIPELPRLHKNVRTSMFFC 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02899 905 SMART Piwi_a_2 561 869 IPR003165 GO:0003676
Trre5g02899 905 ProSiteProfiles PAZ domain profile. 300 392 IPR003100 GO:0005515
Trre5g02899 905 Pfam PAZ domain 279 408 IPR003100 GO:0005515
Trre5g02899 905 SUPERFAMILY PAZ domain 270 430 IPR036085 GO:0005515
Trre5g02899 905 Pfam Argonaute linker 2 domain 418 463 IPR032472 -
Trre5g02899 905 CDD PAZ_argonaute_like 275 391 - -
Trre5g02899 905 Gene3D - 628 905 IPR036397 GO:0003676
Trre5g02899 905 FunFam Protein argonaute 7 270 396 - -
Trre5g02899 905 SMART DUF1785_2 223 275 IPR014811 -
Trre5g02899 905 FunFam Protein argonaute 3 629 905 - -
Trre5g02899 905 CDD Piwi_ago-like 437 863 IPR045246 -
Trre5g02899 905 Pfam Argonaute linker 1 domain 225 273 IPR014811 -
Trre5g02899 905 SUPERFAMILY Ribonuclease H-like 545 867 IPR012337 -
Trre5g02899 905 Gene3D paz domain 269 396 - -
Trre5g02899 905 Gene3D - 456 622 - -
Trre5g02899 905 ProSiteProfiles Piwi domain profile. 561 869 IPR003165 GO:0003676
Trre5g02899 905 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 39 871 - -
Trre5g02899 905 Pfam Piwi domain 561 868 IPR003165 GO:0003676
Trre5g02899 905 Pfam N-terminal domain of argonaute 50 213 IPR032474 -
Trre5g02899 905 MobiDBLite consensus disorder prediction 147 166 - -
Trre5g02899 905 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02899 Trre-Chr5 23193491 23200848 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02899 42 905 Eukaryotic Initiation Factors Gene Family AT1G48410 36.842 3.17e-161 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02899 K11593 - gmx:100778875 1399.42