Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02898 ATGGTGAGTGTATCTGGCTTTGAAGAAGTTGTTGAGCCACCGGCTTTACCTCCATCACCTCCTGATGTGCTTCCTGATATGGAAACAGAAGAAATAGCTCTCCCAACCTATTCTATTATCAGTAGGCCTGGTGTTGGGACCATAGGGAAGCGCATAGCTTTGCTTGTAAACCTCTTCAAAGTTGCTGCTGATGCTACAGATGCAACCTTTTTCCAGTATAGTGTTACTATCACTTCGGAAGATAAAAGAGTCATCGAAAACAAGGGCATCGGGAGAAAACTAATTGATAGGCTTCACCAAACTTACTCTTCTGAACTTGGCGGCAAAAGCTTTGTGTATGATGGAGAAAGAACTTTGTACACAGTCGGTCCTCTTCCAGATAATAAATTTGAGTTCACAGTATTACTTGAGGAATCATTTTCCAAGCGCAGCAGTACTGAGTTTCCCGGTGCTGATGGAAGTCTTCATGGGGAAAATAAAAGGTCAAAACGTTCTTTTCCGCCAAAGGCATTCACAGTGGAGATATGTTTTGCTGCCAAAATACCCTTACAATCCATTGCTCTTTCCCTTAAAGGGATTGAGTCACATGCTAATTCTCAGGATGCATTGAGGGTGCTTGATACCGTACTGAGGCAGCGAGCAGCTAACAGAGGGCGTCTCTTGGTAAGGCAATCTTTTTTTCATGATGACTCGAAGAATTTCATTGATGTTGGAGGTGGAGTAACAGGAGTTCGAGGTTTTCATTCCAGTTTTCGTCTTACACAGGGAGGATTGTCTCTTAATATGGATGTGTCCACAACGATGATCGTAAAACCTGGACCTGTAATTGATTTTCTCCTAACCAACCTGAGTGTGAGGGAACCTCGTTATATTGACTGGGCAAAGGCCAAGAGAATGCTTAAAAATTTAAGAGTTCGCGCTACACATTGTAATCAAGAATTCAAAATTTCTGGCTTGAGTGAGAAACCATGCATTCAACAACTTTTTAGTATGAAGATGAAAAATGGAGAAGACAGTGCGGAGCAGACAGTTGATGTTACTGTATACGAGTATTTTGCTAAACACCGTGGCATTGAGCTGGCCTCTTCTGCTTACCTTCCATGTCTTGATGTTGGGAAGCCAAATCGGCCCATCTTTTTACCCCTGGAGCTATGTTCACTTGTTCCCCTCCAGCGGTATACAAAGGCATTATCTCCTGTGCAAAGAGCATCTTTAGTAGAAAAATCACGCCAAAAGCCTCAAGAAAGAATCAAAATTCTGACAAATGCTATAGGGAATTCTTGCTATGATGATGATGCTGTTCTTGCGGCATGTGGCATTTCTATCGATAAACAATTCACTCCAGTTGAAGGTCGAGTTCTGGAGACACCAAAGTTGAAGGTCGGTAAGAATGAGGACTGCTTCCCTAATAATGGAAGGTGGAATTTTAAAAACAAGACACTTCTACAACCATCACATATTGAATATTGGGCTGTTGTCAACTTTTCTGCACAATGTGATACTAGTTACATAACAAGGGAGCTGATCAAATGTGGAATGAGCAAGGGAATTAATATTGAACGGCCATATACTTTAATAGAGGAAGAAGTTCAAATGAGAAAATCTAACCCGGTTGCAAGGGTTGAAAAGATGTTTGACCTGCTGACATCAAAACTTACTAAAGAACCAAAGTTGATTCTTTGTGTCTTGCCAGAGAGGAAAAACTGTGACATCTATGGGCCTTGGAAAAGGAAGTGCCTGAGTGAAGTTGGGGTTGTCACACAGTGTATTTCCCCTCTCAAGATCACTGATCAGTACCTTACTAACGTACTTCTTAAAATCAATTCTAAGCTTGGAGGAATAAATTCTTTACTGGCAATTGAGCATTCTGGGCATCTTCCCTTAATTAAAGATACCCCAACGATGATTTTAGGGATGGATGTCTCTCATGGTTCCCCTGGCCGATCAGATATTCCATCAATAGCTGCTGTTGTTGGATCTCGATGTTGGCCTCTAATTTCGAGGTATAGAGCGTCTGTGAGATCACAGTCTCCTAAGGTGGAGATGATTGATGCTCTATTCAAGCCTTTGGATAATGGGAATGATGATGGTATTATCAGGGAATTGCTTCTAGATTTCTATAGTTCAAGTAATGGACACAAACCAGCTCAAATTATTCTCTTCAGGGATGGAGTTAGTGAATCACAATTTCAACAGGTTTTGAATATAGAGCTTAACCAGATAATAAAGGCCTATAAATATCTGGAGGAGGTTGATGTTCCCAAGTTCACTGTAATTGTGGCACAGAAGAATCACCATATAAAGCTGTTTCAAGCTAATGCTCTGGAAAACGTTCCTCCTGGGACAGTTGTCGACACAAAAATTGTGCATCCAAGAAATTATGATTTCTACATGTGTACTCATGCTGGAATGATTGGAACGTCTAGGCCTGTACATTATCATGTGTTGCTTGATGAAATCGGATTCTCGCCAGATGACTTGCAAAATTTGATCAATTCACTGTCTTACGTGAACCAACGGAGCACTACTGCAACCTCAATTGTGGCACCTATATCCTATGCCCACCATGCTGCAGCTCAAATGGGACAGTTTCTGAATTTCGACGAGTTATCAGAAGCGTCTTTGAGTCCCGATTCAGAGGGAAACATCCCCATTCCAGAGCTTCCAAGGTTGCATAAAAATGTCAGGACCTCCATGTTCTTCTGTTGA 2709 0.4157 MVSVSGFEEVVEPPALPPSPPDVLPDMETEEIALPTYSIISRPGVGTIGKRIALLVNLFKVAADATDATFFQYSVTITSEDKRVIENKGIGRKLIDRLHQTYSSELGGKSFVYDGERTLYTVGPLPDNKFEFTVLLEESFSKRSSTEFPGADGSLHGENKRSKRSFPPKAFTVEICFAAKIPLQSIALSLKGIESHANSQDALRVLDTVLRQRAANRGRLLVRQSFFHDDSKNFIDVGGGVTGVRGFHSSFRLTQGGLSLNMDVSTTMIVKPGPVIDFLLTNLSVREPRYIDWAKAKRMLKNLRVRATHCNQEFKISGLSEKPCIQQLFSMKMKNGEDSAEQTVDVTVYEYFAKHRGIELASSAYLPCLDVGKPNRPIFLPLELCSLVPLQRYTKALSPVQRASLVEKSRQKPQERIKILTNAIGNSCYDDDAVLAACGISIDKQFTPVEGRVLETPKLKVGKNEDCFPNNGRWNFKNKTLLQPSHIEYWAVVNFSAQCDTSYITRELIKCGMSKGINIERPYTLIEEEVQMRKSNPVARVEKMFDLLTSKLTKEPKLILCVLPERKNCDIYGPWKRKCLSEVGVVTQCISPLKITDQYLTNVLLKINSKLGGINSLLAIEHSGHLPLIKDTPTMILGMDVSHGSPGRSDIPSIAAVVGSRCWPLISRYRASVRSQSPKVEMIDALFKPLDNGNDDGIIRELLLDFYSSSNGHKPAQIILFRDGVSESQFQQVLNIELNQIIKAYKYLEEVDVPKFTVIVAQKNHHIKLFQANALENVPPGTVVDTKIVHPRNYDFYMCTHAGMIGTSRPVHYHVLLDEIGFSPDDLQNLINSLSYVNQRSTTATSIVAPISYAHHAAAQMGQFLNFDELSEASLSPDSEGNIPIPELPRLHKNVRTSMFFC 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02898 902 Gene3D - 453 619 - -
Trre5g02898 902 Gene3D - 625 902 IPR036397 GO:0003676
Trre5g02898 902 SUPERFAMILY Ribonuclease H-like 542 864 IPR012337 -
Trre5g02898 902 CDD PAZ_argonaute_like 272 388 - -
Trre5g02898 902 Pfam Argonaute linker 2 domain 415 460 IPR032472 -
Trre5g02898 902 MobiDBLite consensus disorder prediction 1 22 - -
Trre5g02898 902 Pfam Argonaute linker 1 domain 222 270 IPR014811 -
Trre5g02898 902 FunFam Protein argonaute 7 267 393 - -
Trre5g02898 902 SMART Piwi_a_2 558 866 IPR003165 GO:0003676
Trre5g02898 902 Pfam PAZ domain 276 405 IPR003100 GO:0005515
Trre5g02898 902 ProSiteProfiles PAZ domain profile. 297 389 IPR003100 GO:0005515
Trre5g02898 902 FunFam Protein argonaute 3 626 902 - -
Trre5g02898 902 Gene3D paz domain 266 393 - -
Trre5g02898 902 SUPERFAMILY PAZ domain 267 427 IPR036085 GO:0005515
Trre5g02898 902 MobiDBLite consensus disorder prediction 144 163 - -
Trre5g02898 902 Pfam Piwi domain 558 865 IPR003165 GO:0003676
Trre5g02898 902 Pfam N-terminal domain of argonaute 50 210 IPR032474 -
Trre5g02898 902 ProSiteProfiles Piwi domain profile. 558 866 IPR003165 GO:0003676
Trre5g02898 902 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 39 868 - -
Trre5g02898 902 SMART DUF1785_2 220 272 IPR014811 -
Trre5g02898 902 CDD Piwi_ago-like 434 860 IPR045246 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02898 Trre-Chr5 23193491 23200848 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02898 42 902 Eukaryotic Initiation Factors Gene Family AT1G48410 36.964 2.15e-163 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02898 K11593 - gmx:100778875 1404.81