Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02897 ATGGTGAGTGTATCTGGCTTTGAAGAAGTTGTTGAGCCACCGGCTTTACCTCCATCACCTCCTGATGTGCTTCCTGATATGGAAACAGAAGAAATAGCTCTCCCAACCTATTCTATTATCAGTAGGCCTGGTGTTGGGACCATAGGGAAGCGCATAGCTTTGCTTGTAAACCTCTTCAAAGTTGCTGCTGATGCTACAGATGCAACCTTTTTCCAGTATAGTGTTACTATCACTTCGGAAGATAAAAGAGTCATCGAAAACAAGGGCATCGGGAGAAAACTAATTGATAGGCTTCACCAAACTTACTCTTCTGAACTTGGCGGCAAAAGCTTTGTGTATGATGGAGAAAGAACTTTGTACACAGTCGGTCCTCTTCCAGATAATAAATTTGAGTTCACAGTATTACTTGAGGAATCATTTTCCAAGCGCAGTACTGAGTTTCCCGGTGCTGATGGAAGTCTTCATGGGGAAAATAAAAGGTCAAAACGTTCTTTTCCGCCAAAGGCATTCACAGTGGAGATATGTTTTGCTGCCAAAATACCCTTACAATCCATTGCTCTTTCCCTTAAAGGGATTGAGTCACATGCTAATTCTCAGGATGCATTGAGGGTGCTTGATACCGTACTGAGGCAGCGAGCAGCTAACAGAGGGCGTCTCTTGGTAAGGCAATCTTTTTTTCATGATGACTCGAAGAATTTCATTGATGTTGGAGGTGGAGTAACAGGAGTTCGAGGTTTTCATTCCAGTTTTCGTCTTACACAGGGAGGATTGTCTCTTAATATGGATGTGTCCACAACGATGATCGTAAAACCTGGACCTGTAATTGATTTTCTCCTAACCAACCTGAGTGTGAGGGAACCTCGTTATATTGACTGGGCAAAGGCCAAGAGAATGCTTAAAAATTTAAGAGTTCGCGCTACACATTGTAATCAAGAATTCAAAATTTCTGGCTTGAGTGAGAAACCATGCATTCAACAACTTTTTAGTATGAAGATGAAAAATGGAGAAGACAGTGCGGAGCAGACAGTTGATGTTACTGTATACGAGTATTTTGCTAAACACCGTGGCATTGAGCTGGCCTCTTCTGCTTACCTTCCATGTCTTGATGTTGGGAAGCCAAATCGGCCCATCTTTTTACCCCTGGAGCTATGTTCACTTGTTCCCCTCCAGCGGTATACAAAGGCATTATCTCCTGTGCAAAGAGCATCTTTAGTAGAAAAATCACGCCAAAAGCCTCAAGAAAGAATCAAAATTCTGACAAATGCTATAGGGAATTCTTGCTATGATGATGATGCTGTTCTTGCGGCATGTGGCATTTCTATCGATAAACAATTCACTCCAGTTGAAGGTCGAGTTCTGGAGACACCAAAGTTGAAGGTCGGTAAGAATGAGGACTGCTTCCCTAATAATGGAAGGTGGAATTTTAAAAACAAGACACTTCTACAACCATCACATATTGAATATTGGGCTGTTGTCAACTTTTCTGCACAATGTGATACTAGTTACATAACAAGGGAGCTGATCAAATGTGGAATGAGCAAGGGAATTAATATTGAACGGCCATATACTTTAATAGAGGAAGAAGTTCAAATGAGAAAATCTAACCCGGTTGCAAGGGTTGAAAAGATGTTTGACCTGCTGACATCAAAACTTACTAAAGAACCAAAGTTGATTCTTTGTGTCTTGCCAGAGAGGAAAAACTGTGACATCTATGGGCCTTGGAAAAGGAAGTGCCTGAGTGAAGTTGGGGTTGTCACACAGTGTATTTCCCCTCTCAAGATCACTGATCAGTACCTTACTAACGTACTTCTTAAAATCAATTCTAAGCTTGGAGGAATAAATTCTTTACTGGCAATTGAGCATTCTGGGCATCTTCCCTTAATTAAAGATACCCCAACGATGATTTTAGGGATGGATGTCTCTCATGGTTCCCCTGGCCGATCAGATATTCCATCAATAGCTGCTGTTGTTGGATCTCGATGTTGGCCTCTAATTTCGAGGTATAGAGCGTCTGTGAGATCACAGTCTCCTAAGGTGGAGATGATTGATGCTCTATTCAAGCCTTTGGATAATGGGAATGATGATGGTATTATCAGGGAATTGCTTCTAGATTTCTATAGTTCAAGTAATGGACACAAACCAGCTCAAATTATTCTCTTCAGGGATGGAGTTAGTGAATCACAATTTCAACAGGTTTTGAATATAGAGCTTAACCAGATAATAAAGGCCTATAAATATCTGGAGGAGGTTGATGTTCCCAAGTTCACTGTAATTGTGGCACAGAAGAATCACCATATAAAGCTGTTTCAAGCTAATGCTCTGGAAAACGTTCCTCCTGGGACAGTTGTCGACACAAAAATTGTGCATCCAAGAAATTATGATTTCTACATGTGTACTCATGCTGGAATGATTGGAACGTCTAGGCCTGTACATTATCATGTGTTGCTTGATGAAATCGGATTCTCGCCAGATGACTTGCAAAATTTGATCAATTCACTGTCTTACGTGAACCAACGGAGCACTACTGCAACCTCAATTGTGGCACCTATATCCTATGCCCACCATGCTGCAGCTCAAATGGGACAGTTTCTGAATTTCGACGAGTTATCAGAAGCGTCTTTGAGTCCCGATTCAGAGGGAAACATCCCCATTCCAGAGCTTCCAAGGTTGCATAAAAATGTCAGGACCTCCATGTTCTTCTGTTGA 2706 0.4154 MVSVSGFEEVVEPPALPPSPPDVLPDMETEEIALPTYSIISRPGVGTIGKRIALLVNLFKVAADATDATFFQYSVTITSEDKRVIENKGIGRKLIDRLHQTYSSELGGKSFVYDGERTLYTVGPLPDNKFEFTVLLEESFSKRSTEFPGADGSLHGENKRSKRSFPPKAFTVEICFAAKIPLQSIALSLKGIESHANSQDALRVLDTVLRQRAANRGRLLVRQSFFHDDSKNFIDVGGGVTGVRGFHSSFRLTQGGLSLNMDVSTTMIVKPGPVIDFLLTNLSVREPRYIDWAKAKRMLKNLRVRATHCNQEFKISGLSEKPCIQQLFSMKMKNGEDSAEQTVDVTVYEYFAKHRGIELASSAYLPCLDVGKPNRPIFLPLELCSLVPLQRYTKALSPVQRASLVEKSRQKPQERIKILTNAIGNSCYDDDAVLAACGISIDKQFTPVEGRVLETPKLKVGKNEDCFPNNGRWNFKNKTLLQPSHIEYWAVVNFSAQCDTSYITRELIKCGMSKGINIERPYTLIEEEVQMRKSNPVARVEKMFDLLTSKLTKEPKLILCVLPERKNCDIYGPWKRKCLSEVGVVTQCISPLKITDQYLTNVLLKINSKLGGINSLLAIEHSGHLPLIKDTPTMILGMDVSHGSPGRSDIPSIAAVVGSRCWPLISRYRASVRSQSPKVEMIDALFKPLDNGNDDGIIRELLLDFYSSSNGHKPAQIILFRDGVSESQFQQVLNIELNQIIKAYKYLEEVDVPKFTVIVAQKNHHIKLFQANALENVPPGTVVDTKIVHPRNYDFYMCTHAGMIGTSRPVHYHVLLDEIGFSPDDLQNLINSLSYVNQRSTTATSIVAPISYAHHAAAQMGQFLNFDELSEASLSPDSEGNIPIPELPRLHKNVRTSMFFC 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02897 901 SUPERFAMILY PAZ domain 266 426 IPR036085 GO:0005515
Trre5g02897 901 FunFam Protein argonaute 3 625 901 - -
Trre5g02897 901 MobiDBLite consensus disorder prediction 1 22 - -
Trre5g02897 901 SMART DUF1785_2 219 271 IPR014811 -
Trre5g02897 901 Pfam Argonaute linker 2 domain 414 459 IPR032472 -
Trre5g02897 901 Pfam N-terminal domain of argonaute 50 209 IPR032474 -
Trre5g02897 901 CDD PAZ_argonaute_like 271 387 - -
Trre5g02897 901 Gene3D paz domain 265 392 - -
Trre5g02897 901 ProSiteProfiles PAZ domain profile. 296 388 IPR003100 GO:0005515
Trre5g02897 901 SUPERFAMILY Ribonuclease H-like 541 863 IPR012337 -
Trre5g02897 901 Gene3D - 624 901 IPR036397 GO:0003676
Trre5g02897 901 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 39 867 - -
Trre5g02897 901 Pfam Piwi domain 557 864 IPR003165 GO:0003676
Trre5g02897 901 Pfam PAZ domain 275 404 IPR003100 GO:0005515
Trre5g02897 901 CDD Piwi_ago-like 433 859 IPR045246 -
Trre5g02897 901 Pfam Argonaute linker 1 domain 221 269 IPR014811 -
Trre5g02897 901 FunFam Protein argonaute 7 266 392 - -
Trre5g02897 901 Gene3D - 452 618 - -
Trre5g02897 901 ProSiteProfiles Piwi domain profile. 557 865 IPR003165 GO:0003676
Trre5g02897 901 SMART Piwi_a_2 557 865 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02897 Trre-Chr5 23193491 23200848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02897 42 901 Eukaryotic Initiation Factors Gene Family AT1G48410 37.004 1.37e-163 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02897 K11593 - gmx:100778875 1409.05