Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02878 ATGAGCTTCATCGATGACGGTATAGACTTAGACCCTTCCGATTTCGGCTCATCAGTCCCTCTAAAAAAAGTCCCAAACGGCGACGTTTTCCAAGCATCACGCGCCGGAGACGTCGACCGTCTCCGTTACCTTCTAGAATGCGGCGTTAACGTCAACGCTCGTGACCAATGGGATTCCGTCGCACTTTACTACGCTTGTCTCGCCGGTCATCTTGATGCCGCTCGTATGCTTCTAGAAAGTGGCGCTATTTGCTCCGAACACACTTTTGACGGTGATAGGTGTCATTACGCTGCTCTCAATTTGAAAGTTCGGAAACTTCTTAAAGCTTTTGAAGCTCGTCCTCCTCCTTTGAATCCTTTGCAGTCTTCTCTTCGTGATACTTTTTTTGCTTGCATCTCATCCACTCAAGGGTTCAGTTGCAACTACTTTCCTCCAGACGTGGTTTTTACCGTACAAGGAAGACCCATTGAAGCTCATAGGGTCATATTAAGTGCAAGGTCACCATTTTTCAAGAAAAAGTTTGAAACTGATTGGAAAGAGCGTAGTGAAGTAAGATTTTCACGGGAAAAGTTGTCATATCCTGCGCTTTATAGCCTTATACATTTCTTTTATTCAGACAGATTAGAGATTGCTGTGGATGACATGGAGGATCTTGTGAGAATTTGTAAAGTATGCAAATGTGAATCTCTACAGAAAATTCTCGAGAAAGAAGTAGTTCATCAAAAATATGCACAGTATAAAGCTTTGGCAGATGTAGACAATTCTCAGAAGCGGTTTATTTTACAGGGTCAATCTCTTCCTGAAGAAGACAGGCTTCCTGCTGCCTTGCACAGAATTCTTCTGACAGCCCTTTCAAATTCCACTCATGAAAATGGTCAAGATAATGGAATCAATGAATTGGTATTTAGGATGGATGCCATGCAGATAGCTAAACCTCTAAATGATCTTTCTGATGTTTGTGTAAGAGTTGATAGAAAATATTTTCGCTGCCATAAAGTTATTCTAGCATCAAGGTCAGAATATTTCAAAGCAAGACTATCACGAATGAAGGATTTCCATGAAGGGAAAGATGAATTATATGTTGGCTTCCTTCCTTGTCTTGAAGAACATGATATGAGTGTGGAAGCATTTGAGAAAATGATTGAATATATGTACACCGACCGTTTGCAGGAAATAAATCCAGATCAGGCTGAGGAAATGTTTGATATTGCTTCTAGATACTTGATGTTTCCTCTTAAGCGTGCGGTGGCTGATGTTTTAATACCACACTTGGAAGTGGCGTCACCTGAAGAACTTTGCTATTGGTTAATGCTAGCGGACATGTATGGTGTTTTGAAGATTCGGGAATTCTGTTTAGACACAATTGCCTGTAATTTTGAAATGTTTGCCGATACTAAAGATTTTCGGGCACTGTTGTTGACTTTGCCTCCACCATCTGGAGACTCGTCTCTTCGTACCACTGTCCCAAGCATGCCTGGATCTGCCCTAAATAATGATCAAGGAAATCTTCTTGATGATTTACGTGATAAATGGCTCGAGATTGAAGCTGCTGAGCTTGACGAAAGAGATGAGAGTGCTTTACAATTTGACAAGCGCCTAGAGATGCTTATGCTTGTCGCAGAGCATGAAAAGTCATCAGTTGATGCTGATTCAAATGGTGTTAATGATGTCAAACACTTGGCTTTCTCCCCAATCACACCTTTAATTTCAGGTGAACAAAAAGAACCATAG 1731 0.4125 MSFIDDGIDLDPSDFGSSVPLKKVPNGDVFQASRAGDVDRLRYLLECGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLNPLQSSLRDTFFACISSTQGFSCNYFPPDVVFTVQGRPIEAHRVILSARSPFFKKKFETDWKERSEVRFSREKLSYPALYSLIHFFYSDRLEIAVDDMEDLVRICKVCKCESLQKILEKEVVHQKYAQYKALADVDNSQKRFILQGQSLPEEDRLPAALHRILLTALSNSTHENGQDNGINELVFRMDAMQIAKPLNDLSDVCVRVDRKYFRCHKVILASRSEYFKARLSRMKDFHEGKDELYVGFLPCLEEHDMSVEAFEKMIEYMYTDRLQEINPDQAEEMFDIASRYLMFPLKRAVADVLIPHLEVASPEELCYWLMLADMYGVLKIREFCLDTIACNFEMFADTKDFRALLLTLPPPSGDSSLRTTVPSMPGSALNNDQGNLLDDLRDKWLEIEAAELDERDESALQFDKRLEMLMLVAEHEKSSVDADSNGVNDVKHLAFSPITPLISGEQKEP 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02878 576 Gene3D Potassium Channel Kv1.1; Chain A 305 456 IPR011333 -
Trre5g02878 576 Gene3D Potassium Channel Kv1.1; Chain A 118 259 IPR011333 -
Trre5g02878 576 Pfam BTB/POZ domain 143 241 IPR000210 GO:0005515
Trre5g02878 576 Pfam BTB/POZ domain 315 421 IPR000210 GO:0005515
Trre5g02878 576 PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 7 540 IPR044515 -
Trre5g02878 576 SUPERFAMILY Ankyrin repeat 31 108 IPR036770 -
Trre5g02878 576 SMART BTB_4 317 424 IPR000210 GO:0005515
Trre5g02878 576 SMART BTB_4 145 242 IPR000210 GO:0005515
Trre5g02878 576 SUPERFAMILY POZ domain 314 423 IPR011333 -
Trre5g02878 576 Gene3D - 29 114 IPR036770 -
Trre5g02878 576 ProSiteProfiles BTB domain profile. 317 393 IPR000210 GO:0005515
Trre5g02878 576 CDD BTB_POZ_ZBTB_KLHL-like 316 407 - -
Trre5g02878 576 FunFam BTB/POZ domain-containing protein 23 142 - -
Trre5g02878 576 Pfam Ankyrin repeats (many copies) 30 78 IPR002110 GO:0005515
Trre5g02878 576 CDD BACK 428 471 - -
Trre5g02878 576 ProSiteProfiles BTB domain profile. 145 212 IPR000210 GO:0005515
Trre5g02878 576 FunFam BTB/POZ domain-containing protein 139 261 - -
Trre5g02878 576 SUPERFAMILY POZ domain 138 236 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02878 Trre-Chr5 22946345 22952659 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre5g02878 BTB 3.4e-17 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02878 K10520 - gmx:100812009 926.776