Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02877 ATGAGCTTCATCGATGACGGTATAGACTTAGACCCTTCCGATTTCGGCTCATCAGTCCCTCTAAAAAAAGTCCCAAACGGCGACGTTTTCCAAGCATCACGCGCCGGAGACGTCGACCGTCTCCGTTACCTTCTAGAATGCGGCGTTAACGTCAACGCTCGTGACCAATGGGATTCCGTCGCACTTTACTACGCTTGTCTCGCCGGTCATCTTGATGCCGCTCGTATGCTTCTAGAAAGTGGCGCTATTTGCTCCGAACACACTTTTGACGGTGATAGGTGTCATTACGCTGCTCTCAATTTGAAAGTTCGGAAACTTCTTAAAGCTTTTGAAGCTCGTCCTCCTCCTTTGAATCCTTTGCAGTCTTCTCTTCGTGATACTTTTTTTGCTTGTCCTGCTAATTCGCTTTCCGGTGGCTTTCAGTTACCTGGCATCTCATCCACTCAAGGGTTCAGTTGCAACTACTTTCCTCCAGACGTGGTTTTTACCGTACAAGGAAGACCCATTGAAGCTCATAGGGTCATATTAAGTGCAAGGTCACCATTTTTCAAGAAAAAGTTTGAAACTGATTGGAAAGAGCGTAGTGAAGTAAGATTTTCACGGGAAAAGTTGTCATATCCTGCGCTTTATAGCCTTATACATTTCTTTTATTCAGACAGATTAGAGATTGCTGTGGATGACATGGAGGATCTTGTGAGAATTTGTAAAGTATGCAAATGTGAATCTCTACAGAAAATTCTCGAGAAAGAAGTAGTTCATCAAAAATATGCACAGTATAAAGCTTTGGCAGATGTAGACAATTCTCAGAAGCGGTTTATTTTACAGGGTCAATCTCTTCCTGAAGAAGACAGGCTTCCTGCTGCCTTGCACAGAATTCTTCTGACAGCCCTTTCAAATTCCACTCATGAAAATGGTCAAGATAATGGAATCAATGAATTGGTATTTAGGATGGATGCCATGCAGATAGCTAAACCTCTAAATGATCTTTCTGATGTTTGTGTAAGAGTTGATAGAAAATATTTTCGCTGCCATAAAGTTATTCTAGCATCAAGGTCAGAATATTTCAAAGCAAGACTATCACGAATGAAGGATTTCCATGAAGGGAAAGATGAATTATATGTTGGCTTCCTTCCTTGTCTTGAAGAACATGATATGAGTGTGGAAGCATTTGAGAAAATGATTGAATATATGTACACCGACCGTTTGCAGGAAATAAATCCAGATCAGGCTGAGGAAATGTTTGATATTGCTTCTAGATACTTGATGTTTCCTCTTAAGCGTGCGGTGGCTGATGTTTTAATACCACACTTGGAAGTGGCGTCACCTGAAGAACTTTGCTATTGGTTAATGCTAGCGGACATGTATGGTGTTTTGAAGATTCGGGAATTCTGTTTAGACACAATTGCCTGTAATTTTGAAATGTTTGCCGATACTAAAGATTTTCGGGCACTGTTGTTGACTTTGCCTCCACCATCTGGAGACTCGTCTCTTCGTACCACTGTCCCAAGCATGCCTGGATCTGCCCTAAATAATGATCAAGGAAATCTTCTTGATGATTTACGTGATAAATGGCTCGAGATTGAAGCTGCTGAGCTTGACGAAAGAGATGAGAGTGCTTTACAATTTGACAAGCGCCTAGAGATGCTTATGCTTGTCGCAGAGCATGAAAAGTCATCAGTTGATGCTGATTCAAATGGTGTTAATGATGTCAAACACTTGGCTTTCTCCCCAATCACACCTTTAATTTCAGGTGAACAAAAAGAACCATAG 1770 0.4147 MSFIDDGIDLDPSDFGSSVPLKKVPNGDVFQASRAGDVDRLRYLLECGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLNPLQSSLRDTFFACPANSLSGGFQLPGISSTQGFSCNYFPPDVVFTVQGRPIEAHRVILSARSPFFKKKFETDWKERSEVRFSREKLSYPALYSLIHFFYSDRLEIAVDDMEDLVRICKVCKCESLQKILEKEVVHQKYAQYKALADVDNSQKRFILQGQSLPEEDRLPAALHRILLTALSNSTHENGQDNGINELVFRMDAMQIAKPLNDLSDVCVRVDRKYFRCHKVILASRSEYFKARLSRMKDFHEGKDELYVGFLPCLEEHDMSVEAFEKMIEYMYTDRLQEINPDQAEEMFDIASRYLMFPLKRAVADVLIPHLEVASPEELCYWLMLADMYGVLKIREFCLDTIACNFEMFADTKDFRALLLTLPPPSGDSSLRTTVPSMPGSALNNDQGNLLDDLRDKWLEIEAAELDERDESALQFDKRLEMLMLVAEHEKSSVDADSNGVNDVKHLAFSPITPLISGEQKEP 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02877 589 CDD BACK 441 484 - -
Trre5g02877 589 FunFam BTB/POZ domain-containing protein 152 274 - -
Trre5g02877 589 SUPERFAMILY POZ domain 327 436 IPR011333 -
Trre5g02877 589 SUPERFAMILY POZ domain 153 249 IPR011333 -
Trre5g02877 589 Gene3D - 29 114 IPR036770 -
Trre5g02877 589 SMART BTB_4 158 255 IPR000210 GO:0005515
Trre5g02877 589 SMART BTB_4 330 437 IPR000210 GO:0005515
Trre5g02877 589 Pfam Ankyrin repeats (many copies) 30 78 IPR002110 GO:0005515
Trre5g02877 589 Pfam BTB/POZ domain 328 434 IPR000210 GO:0005515
Trre5g02877 589 Pfam BTB/POZ domain 156 254 IPR000210 GO:0005515
Trre5g02877 589 FunFam BTB/POZ domain-containing protein 23 141 - -
Trre5g02877 589 ProSiteProfiles BTB domain profile. 158 225 IPR000210 GO:0005515
Trre5g02877 589 ProSiteProfiles BTB domain profile. 330 406 IPR000210 GO:0005515
Trre5g02877 589 Gene3D Potassium Channel Kv1.1; Chain A 318 469 IPR011333 -
Trre5g02877 589 Gene3D Potassium Channel Kv1.1; Chain A 149 272 IPR011333 -
Trre5g02877 589 SUPERFAMILY Ankyrin repeat 31 108 IPR036770 -
Trre5g02877 589 PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 7 553 IPR044515 -
Trre5g02877 589 CDD BTB_POZ_ZBTB_KLHL-like 329 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02877 Trre-Chr5 22946345 22952659 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre5g02877 BTB 3.5e-17 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02877 K10520 - gmx:100812009 917.531