Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02872 ATGGAAGCAAAGAAAGAGGAGGCACTTAAAGCGATAGCGAATGCTGAGAAAAGATTTGCTCATAGAGACTTTGTTGGAGCAAAAAGTTATGCTTTAAAAGCCAAAACACTGTGTCCTGGATTAGAGGGTATATCTCAATTGGTGGCCACTTTTGAAGTTTACATTGCCTCTCAAGTTACCTGCAATGGTGAACTAGATTGGTATTCCATTATGGGTTTAAAACCTTCGACAAATATAGAAGCTGTGAAGAAACGTTACAAGAAGATGGCTGGGTTGCTCCACCCTGATAATAACAAGTGTGTCGGAGCTGATGGGGCATTTCATCTTGTTTCTGAGGCATGGAGTAGACTGTCTGGTAGTTATGATCTGAAGAGAAATGCACAATCGGGTGCTGGGCATGGACTTCATCATAAGGGTTTGTCTTCCGTTCATGCCTCTGGTGGTAATCAAGATACTTTCTGGACGATTTGTACTTCTTGCAAAGTTCAGTATGAGTATCTACGCAAGTATATAAATAAGAAACTTTCTTGTAAGAATTGCCGTGGGGTTTTCATTGCCGTTGAAACAGCCCCGGCAAATGGTTCATTCCCATATTGTCCTTGGTCTTATGGGTCTAGCAGTGGTTATGGAAGCCATTCATATGATGGTGTTACATATGTTCCCACTAATGGCGCCTATTTCAATGGTAATGGAGTTACCGGATACCACTCGGCACACGGATATGAGTATGCTTCAAATGTTCCGTATCAAATCAACTCTGCTGGATATGTCAATCAAAATGGATCAACTACCTTACCTGCTTGTCAGGCCAATGGGCATGCAAAGAGGGGAAGACCAAAAGTTAAATCAGGAGCTGATAGGAAGCATTGCATGACAGAGACAGTGGTCAATATAAATTCAGATGTATCATTCTCCCGGAATGAACCACAGGAGGTTAAGCCGAGTAGACCTGAGAAGAAAAGGAAAGTTCTAGGAGTCAGTTTAAGAGATGTCCATGAAGGAAAGGGTTTAAAATGTGCTTCAGAGTCAGGATTGGCTAATGGGAATGGAAGCGTTGGGCATGGCCAGAGGCTTTCCTGTACAAGTGAAGTTACAACCAAACAGTATGCCAAACAGTATTCCATGGCACCGGCTTTTGATGCAAGAAAATTATTGATTGAGAAAGCCAGGACAGAAATTAGGAAAAAACTGGATGAGATGAAGTTGGCATCTGAAACTGCAGCTGCTGTTAATGAGAGAAAGAAATCTCAAGCTGATGTTGGTCAGGTCAAAGGAGACACACACATTAAAACAGTTCTGAACGTTTCTGATAATCAGTTAGAACATAGGAAAACTGTTCCAGTGACAATTACTGTCCCAGATCCCGACTTTCATGACTTTGACAAAGATAGGTCAGAGGCGTGCTTCAAGCCCAAGCAAATATGGGCCTTGTATGATGAGGAGGATGGGATGCCCCGCTTGTATTGTCTGATACGCGAGGTTGTGTCTGTCAATCCATTCAAGATTAACATTAGTTACTTGAGTTCAAAAACTGATAGCGAGTTTGGCCAAGTGAACTGGCTTGTTTCTGGTTTCACCAAATCTTGTGGAAATTTCAGGGCCATGACCTCTGATGTTGTTGACCAAGTTAACATTTTTTCTCATGCTCTAAGCAGGGTGAAGGCCGGTCGAGGCGGTTGTGTTCGCATATATCCTAAATGTGGAGAAATTTGGGCTGTTTACAGAAACTGGTCAACAGATTGGAACAGATCTACACCAGATGAAGTAAGGCATCAGTACGATATGGTGGAGGTGCTGGATGATTATTCTGAGGAGCTTGGTCTTTGCATTAGCCCCCTTATTAAGTTGGATGGATTCAAAACCGTGTACAAGAGGAATGCAGACAAAAGTGCCATTCGATGGATTCCAAGAAGAGAAATGTTGCGCTTTTCTCACCAAGTGCCTTCGTGGTTGTTGAAGGGGGAGGAAGCAAGCAATTTGCCTGACAAATGTTGGGACCTTGATCCAGCTGCAACTCCTGACGAGCTCCTTCATGCTGCTATAGAAGCAGAAAATGCTTCGTAG 2064 0.4297 MEAKKEEALKAIANAEKRFAHRDFVGAKSYALKAKTLCPGLEGISQLVATFEVYIASQVTCNGELDWYSIMGLKPSTNIEAVKKRYKKMAGLLHPDNNKCVGADGAFHLVSEAWSRLSGSYDLKRNAQSGAGHGLHHKGLSSVHASGGNQDTFWTICTSCKVQYEYLRKYINKKLSCKNCRGVFIAVETAPANGSFPYCPWSYGSSSGYGSHSYDGVTYVPTNGAYFNGNGVTGYHSAHGYEYASNVPYQINSAGYVNQNGSTTLPACQANGHAKRGRPKVKSGADRKHCMTETVVNINSDVSFSRNEPQEVKPSRPEKKRKVLGVSLRDVHEGKGLKCASESGLANGNGSVGHGQRLSCTSEVTTKQYAKQYSMAPAFDARKLLIEKARTEIRKKLDEMKLASETAAAVNERKKSQADVGQVKGDTHIKTVLNVSDNQLEHRKTVPVTITVPDPDFHDFDKDRSEACFKPKQIWALYDEEDGMPRLYCLIREVVSVNPFKINISYLSSKTDSEFGQVNWLVSGFTKSCGNFRAMTSDVVDQVNIFSHALSRVKAGRGGCVRIYPKCGEIWAVYRNWSTDWNRSTPDEVRHQYDMVEVLDDYSEELGLCISPLIKLDGFKTVYKRNADKSAIRWIPRREMLRFSHQVPSWLLKGEEASNLPDKCWDLDPAATPDELLHAAIEAENAS 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02872 687 ProSiteProfiles dnaJ domain profile. 66 132 IPR001623 -
Trre5g02872 687 SMART dnaj_3 65 122 IPR001623 -
Trre5g02872 687 SUPERFAMILY Chaperone J-domain 56 120 IPR036869 -
Trre5g02872 687 PANTHER BNAC03G44070D PROTEIN 1 673 - -
Trre5g02872 687 Pfam Domain of unknown function (DUF3444) 449 656 IPR024593 -
Trre5g02872 687 Gene3D DnaJ domain 54 122 IPR036869 -
Trre5g02872 687 MobiDBLite consensus disorder prediction 267 287 - -
Trre5g02872 687 Coils Coil 386 406 - -
Trre5g02872 687 CDD DnaJ 66 118 IPR001623 -
Trre5g02872 687 Pfam DnaJ domain 66 118 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02872 Trre-Chr5 22906593 22908656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02872 5 243 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 28.137 9.68e-23 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02872 - - gmx:100792639 1015.76