Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02869 ATGCGTCCACCGATGAAGAGAATCGATTATAATGTAGGAGATAAAGTAGAAGTATGTTGCAAAGAAGAAGGGTTTGTTGGATCATACTATGAAGCCACAATTGTTTCATGTCTTGATAATGGAAAATATGTTGTTTGTTACAAAAACCTTCTTAAAGATGATGAGTCTGGTCTTCTTACTGAGACATTATTTCCAAAGGATCTTCGTCCATTACCGCCACACGTTCGTAACCCTCCCAAGTTCCAACTCAATCAAAAAGTGGATGTTTTTGATAAAGATGGTTGGGTTCATCATGAGTTGTCGTTTTGCGGGGAGTGGATCTTGGAAGCTTAG 333 0.3874 MRPPMKRIDYNVGDKVEVCCKEEGFVGSYYEATIVSCLDNGKYVVCYKNLLKDDESGLLTETLFPKDLRPLPPHVRNPPKFQLNQKVDVFDKDGWVHHELSFCGEWILEA 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02869 110 Gene3D - 4 73 - -
Trre5g02869 110 SMART agenet_At_2 8 76 IPR014002 -
Trre5g02869 110 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 10 95 - -
Trre5g02869 110 CDD Tudor_Agenet_AtDUF_rpt1_3 12 73 - -
Trre5g02869 110 Pfam Agenet domain 13 73 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02869 Trre-Chr5 22846938 22847383 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02869 22 95 PHD Transcription Factor Family AT5G58610 34.043 5.41e-07 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02869 - - tpra:123923978 171.014