Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02866 ATGGGTCGTTGCCGAACCGCTTCACGCTCCGCCGATGATGACCCCAACCACAGATCCAAGAGAAAAAGGGCTGCTTTAAATGCTGAGAATTTAGAAACTTCATCTGCAGGCATGGGAGTAACCGATGGCAAGGTATCACTATATCATTGTAATTATTGCAACAAAGATATTTCCGGGAAGATTCGCATCAAATGTGTTGTGTGTCAAGATTTTGATCTCTGCATAGAGTGCTTCTCTGTTGGTGCTGAGTTGACACCTCATAAAAGCAATCATCCATATCGGGTTATGGATAATCTATCTTTTCCACTTATATGTCCAGATTGGAGTGCAGATGAAGAGATGTTACTTCTTGAGGCCATTGACATGTATGGATTTGGAAATTGGAATGATGTTGCAGACAATGTTGGAACGAAAAGCAAATCTCAGTGTATTGAACACTATAACGCTGTATATCTGAATTCACCATGTTTTCCTCTACCTGATTTGTCTCTTGTGAAGGGGAAGAACAAAGAGGAACTTCTTGCCATGGCAAAGGGACATCACGTCAAGAAAGAATTTCCTCCAAATGCAGAGCTGACTCTGAAAGAAGAAACTCTTTTTTCTGATGGAATAAACTCTGAAGAATCTAAGAAGGCAGAAACCACCGATCAAGCAATGTCCAGGCTAACCTCAGCATGCGGTAAAAAAGCTCTTTCAAGTACAACCAAGAAGGCTTCCAATGTGAGCCAGAATATTGATGGAGTTAAGGTGGAAGTAGAATCTCAAGCAGGTCGGAGCATTGGTGAAAAGAAACCTAAATTATCTGGGGAATATAATAAGCCTTCTATGAAAGCGTTGAGTGGGTACAATTCTAAGAGAGGTGAATTTGAAATTGAATATGACAATGATGCTGAGCAAGTTTTGGCAGAAATGGAATTTAAGGACACTGATACTGAAGCTGAACGTGAAGCGAAATTGCAAGTGCTCCGTAGCTATGGAAAAAGGTTAGATGAACGGAAGTACAGAAAAAAATTTATACTTGAAAGAAATTTACTTTCTCCTGATCCTTTTGAGAAATTTCTCTCACCTGAAGAGCTTGAAATATGTCAACGGTACAAGGTCTTCATGCGGTTTCACTCAAAAGAAGAGCATGAGGAGTTGCTAAAAACTATTATTGAAGAACACCGGCTTCTCAAAAGAATAAAAGACTTACAGGAAGCTCGTATTGCTGGCTGTGTAACTGCTGCTGATGCATATCAATTTGTTGAACAAAAGAGGGCAAATGAAGCTGTACAAGGTGACAACAAAGATAGTGGTCAGATTGGAACAAGTGGTAAGACTTCACAGAGGCCAAATTTCCCCAAAGTAGAGCTTGGTAGTAGCCCACGCGGGATCCATAAGGGCACTACAACATCATTTCCTGGTATCAAGGATGCACCGGCGGCCATACAAGCTATCACAAGTTCGCTAGAAGAATGGGATATCAGTGATTTTGACGGGGCTGAATTACTATCCGAATCAGAGATAAAGCTTTGTAACGAGAACAGATTACTACCGAGACACTACCTCCACATAAGTCAGACCATGCAATTAGAAATTTCAAAGGGCAATGTAACCAAGAAATCTGATGCATATCCATTGTTCAAGTTCTCTCCAAGCAAGATTGATAGAATTTATGACATGCTTGTGGAAAAAGGAGTTGTGCAACCTCAAGCATAA 1698 0.4064 MGRCRTASRSADDDPNHRSKRKRAALNAENLETSSAGMGVTDGKVSLYHCNYCNKDISGKIRIKCVVCQDFDLCIECFSVGAELTPHKSNHPYRVMDNLSFPLICPDWSADEEMLLLEAIDMYGFGNWNDVADNVGTKSKSQCIEHYNAVYLNSPCFPLPDLSLVKGKNKEELLAMAKGHHVKKEFPPNAELTLKEETLFSDGINSEESKKAETTDQAMSRLTSACGKKALSSTTKKASNVSQNIDGVKVEVESQAGRSIGEKKPKLSGEYNKPSMKALSGYNSKRGEFEIEYDNDAEQVLAEMEFKDTDTEAEREAKLQVLRSYGKRLDERKYRKKFILERNLLSPDPFEKFLSPEELEICQRYKVFMRFHSKEEHEELLKTIIEEHRLLKRIKDLQEARIAGCVTAADAYQFVEQKRANEAVQGDNKDSGQIGTSGKTSQRPNFPKVELGSSPRGIHKGTTTSFPGIKDAPAAIQAITSSLEEWDISDFDGAELLSESEIKLCNENRLLPRHYLHISQTMQLEISKGNVTKKSDAYPLFKFSPSKIDRIYDMLVEKGVVQPQA 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02866 565 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Trre5g02866 565 SUPERFAMILY RING/U-box 48 111 - -
Trre5g02866 565 Pfam Zinc finger, ZZ type 48 87 IPR000433 GO:0008270
Trre5g02866 565 Gene3D - 102 153 - -
Trre5g02866 565 PIRSF Txn_adaptor_ADA2 35 564 IPR016827 GO:0003713|GO:0006357|GO:0035065
Trre5g02866 565 FunFam Transcriptional adapter 2 478 562 - -
Trre5g02866 565 MobiDBLite consensus disorder prediction 426 448 - -
Trre5g02866 565 Gene3D - 478 562 IPR036388 -
Trre5g02866 565 CDD ZZ_ADA2 48 96 IPR041983 -
Trre5g02866 565 SUPERFAMILY Homeodomain-like 101 154 IPR009057 -
Trre5g02866 565 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Trre5g02866 565 SUPERFAMILY Homeodomain-like 481 562 IPR009057 -
Trre5g02866 565 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Trre5g02866 565 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 48 558 - -
Trre5g02866 565 MobiDBLite consensus disorder prediction 420 454 - -
Trre5g02866 565 FunFam Transcriptional adapter 41 96 - -
Trre5g02866 565 FunFam Transcriptional adapter 2 101 153 - -
Trre5g02866 565 SMART sant 104 153 IPR001005 -
Trre5g02866 565 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Trre5g02866 565 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Trre5g02866 565 SMART zz_5 44 88 IPR000433 GO:0008270
Trre5g02866 565 MobiDBLite consensus disorder prediction 1 26 - -
Trre5g02866 565 Pfam Myb-like DNA-binding domain 107 148 IPR001005 -
Trre5g02866 565 ProSiteProfiles SWIRM domain profile. 477 565 IPR007526 GO:0005515
Trre5g02866 565 Gene3D - 43 96 IPR043145 -
Trre5g02866 565 CDD SANT 108 148 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02866 Trre-Chr5 22819765 22833021 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02866 1 560 EF-hand Containing Proteins AT3G07740 52.166 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre5g02866 Myb_DNA-binding 1.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02866 K11314 - gmx:100779424 825.854