Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02865 ATGGGTCGTTGCCGAACCGCTTCACGCTCCGCCGATGATGACCCCAACCACAGATCCAAGAGAAAAAGGGCTGCTTTAAATGCTGAGAATTTAGAAACTTCATCTGCAGGCATGGGAGTAACCGATGGCAAGGTATCACTATATCATTGTAATTATTGCAACAAAGATATTTCCGGGAAGATTCGCATCAAATGTGTTGTGTGTCAAGATTTTGATCTCTGCATAGAGTGCTTCTCTGTTGGTGCTGAGTTGACACCTCATAAAAGCAATCATCCATATCGGGTTATGGATAATCTATCTTTTCCACTTATATGTCCAGATTGGAGTGCAGATGAAGAGATGTTACTTCTTGAGGCCATTGACATGTATGGATTTGGAAATTGGAATGATGTTGCAGACAATGTTGGAACGAAAAGCAAATCTCAGTGTATTGAACACTATAACGCTGTATATCTGAATTCACCATGTTTTCCTCTACCTGATTTGTCTCTTGTGAAGGGGAAGAACAAAGAGGAACTTCTTGCCATGGCAAAGGGACATCACGTCAAGAAAGAATTTCCTCCAAATGCAGAGCTGACTCTGAAAGAAGAAACTCTTTTTTCTGATGGAATAAACTCTGAAGAATCTAAGAAGGCAGAAACCACCGATCAAGCAATGTCCAGGCTAACCTCAGCATGCGGTAAAAAAGCTCTTTCAAGTACAACCAAGAAGGCTTCCAATGTGAGCCAGAATATTGATGGAGTTAAGGTGGAAGAATCTCAAGCAGGTCGGAGCATTGGTGAAAAGAAACCTAAATTATCTGGGGAATATAATAAGCCTTCTATGAAAGCGTTGAGTGGGTACAATTCTAAGAGAGGTGAATTTGAAATTGAATATGACAATGATGCTGAGCAAGTTTTGGCAGAAATGGAATTTAAGGACACTGATACTGAAGCTGAACGTGAAGCGAAATTGCAAGTGCTCCGTAGCTATGGAAAAAGGTTAGATGAACGGAAGTACAGAAAAAAATTTATACTTGAAAGAAATTTACTTTCTCCTGATCCTTTTGAGAAATTTCTCTCACCTGAAGAGCTTGAAATATGTCAACGGTACAAGGTCTTCATGCGGTTTCACTCAAAAGAAGAGCATGAGGAGTTGCTAAAAACTATTATTGAAGAACACCGGCTTCTCAAAAGAATAAAAGACTTACAGGAAGCTCGTATTGCTGGCTGTGTAACTGCTGCTGATGCATATCAATTTGTTGAACAAAAGAGGGCAAATGAAGCTGTACAAGGTGACAACAAAGATAGTGGTCAGATTGGAACAAGTGGTAAGACTTCACAGAGGCCAAATTTCCCCAAAGTAGAGCTTGGTAGTAGCCCACGCGGGATCCATAAGGGCACTACAACATCATTTCCTGGTATCAAGGATGCACCGGCGGCCATACAAGCTATCACAAGTTCGCTAGAAGAATGGGATATCAGTGATTTTGACGGGGCTGAATTACTATCCGAATCAGAGATAAAGCTTTGTAACGAGAACAGATTACTACCGAGACACTACCTCCACATAAGTCAGACCATGCAATTAGAAATTTCAAAGGGCAATGTAACCAAGAAATCTGATGCATATCCATTGTTCAAGTTCTCTCCAAGCAAGATTGATAGAATTTATGACATGCTTGTGGAAAAAGGAGTTGTGCAACCTCAAGCATAA 1695 0.4065 MGRCRTASRSADDDPNHRSKRKRAALNAENLETSSAGMGVTDGKVSLYHCNYCNKDISGKIRIKCVVCQDFDLCIECFSVGAELTPHKSNHPYRVMDNLSFPLICPDWSADEEMLLLEAIDMYGFGNWNDVADNVGTKSKSQCIEHYNAVYLNSPCFPLPDLSLVKGKNKEELLAMAKGHHVKKEFPPNAELTLKEETLFSDGINSEESKKAETTDQAMSRLTSACGKKALSSTTKKASNVSQNIDGVKVEESQAGRSIGEKKPKLSGEYNKPSMKALSGYNSKRGEFEIEYDNDAEQVLAEMEFKDTDTEAEREAKLQVLRSYGKRLDERKYRKKFILERNLLSPDPFEKFLSPEELEICQRYKVFMRFHSKEEHEELLKTIIEEHRLLKRIKDLQEARIAGCVTAADAYQFVEQKRANEAVQGDNKDSGQIGTSGKTSQRPNFPKVELGSSPRGIHKGTTTSFPGIKDAPAAIQAITSSLEEWDISDFDGAELLSESEIKLCNENRLLPRHYLHISQTMQLEISKGNVTKKSDAYPLFKFSPSKIDRIYDMLVEKGVVQPQA 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02865 564 Gene3D - 477 561 IPR036388 -
Trre5g02865 564 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Trre5g02865 564 SUPERFAMILY RING/U-box 48 111 - -
Trre5g02865 564 MobiDBLite consensus disorder prediction 425 447 - -
Trre5g02865 564 Gene3D - 102 153 - -
Trre5g02865 564 Pfam Myb-like DNA-binding domain 107 148 IPR001005 -
Trre5g02865 564 FunFam Transcriptional adapter 41 96 - -
Trre5g02865 564 CDD ZZ_ADA2 48 96 IPR041983 -
Trre5g02865 564 MobiDBLite consensus disorder prediction 419 453 - -
Trre5g02865 564 FunFam Transcriptional adapter 2 477 561 - -
Trre5g02865 564 SUPERFAMILY Homeodomain-like 101 154 IPR009057 -
Trre5g02865 564 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Trre5g02865 564 SUPERFAMILY Homeodomain-like 480 561 IPR009057 -
Trre5g02865 564 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Trre5g02865 564 FunFam Transcriptional adapter 2 101 153 - -
Trre5g02865 564 SMART sant 104 153 IPR001005 -
Trre5g02865 564 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Trre5g02865 564 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Trre5g02865 564 PIRSF Txn_adaptor_ADA2 35 563 IPR016827 GO:0003713|GO:0006357|GO:0035065
Trre5g02865 564 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 48 557 - -
Trre5g02865 564 SMART zz_5 44 88 IPR000433 GO:0008270
Trre5g02865 564 MobiDBLite consensus disorder prediction 1 26 - -
Trre5g02865 564 Pfam Zinc finger, ZZ type 48 87 IPR000433 GO:0008270
Trre5g02865 564 Gene3D - 43 96 IPR043145 -
Trre5g02865 564 ProSiteProfiles SWIRM domain profile. 476 564 IPR007526 GO:0005515
Trre5g02865 564 CDD SANT 108 148 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02865 Trre-Chr5 22819765 22833021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02865 1 559 EF-hand Containing Proteins AT3G07740 52.166 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre5g02865 Myb_DNA-binding 1.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02865 K11314 - gmx:100779424 819.69