Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02855 ATGGCACCATATGAAAGTTATAGTAGTCATGATCATGAGCATCCATCTCCCACAGATTTGTTGAAATTAAATGTCAATATTCACTACTTGGCTAACTCAATTCACATAGGCTATGCATCCTTCAATCTTCCAACCATAGTCTTCAAGAAATTCTTCAGCCAAGAGGGTCAAGATTACCTATGGACACACTTATCCAAGGATCCCTTATTAACCTTGGATGTACTTGAAACCTTATTAATTAAATTAATATGTGAGGTTCAACAAGCATATAATATTGATTATTATAATTATGATATTGCTGACCATGATGATGAATTAGTTGAAACACAACCCAATGTGTTCAAGTTATGCTTGAATACGGAGATACATGAAGATGATTTTGGTGATGAAGATATGGAATTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATGCATGGAAGAAATATATGGTGATGAATTTATAGAAGAATTTGGAATGGTTCCAGCTTCAAAGGATGCTATTGAGACAATGAAGACAAAATTGGATTTGAATGTTATGAAACATAGAGAAATATTATTTTGTACTATATGTATGGATGAGTTTGATCATATTAATAATGATGAGGGTATTATTGGCACATCAAACATAATTAACATGCCTTGTAATCATGTGTTTCACCAACAATGTATTGTGAAGTGGTTACAAACTAGTCATACATGTCCCTTGTGTCGATATCCAATGCCTACTACTCTCAATAGTTGA 768 0.3294 MAPYESYSSHDHEHPSPTDLLKLNVNIHYLANSIHIGYASFNLPTIVFKKFFSQEGQDYLWTHLSKDPLLTLDVLETLLIKLICEVQQAYNIDYYNYDIADHDDELVETQPNVFKLCLNTEIHEDDFGDEDMEFEEEEEEEEEEEEEEEEEECMEEIYGDEFIEEFGMVPASKDAIETMKTKLDLNVMKHREILFCTICMDEFDHINNDEGIIGTSNIINMPCNHVFHQQCIVKWLQTSHTCPLCRYPMPTTLNS 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02855 255 SMART ringv_2 195 246 IPR011016 GO:0008270
Trre5g02855 255 Coils Coil 127 157 - -
Trre5g02855 255 SMART ring_2 196 245 IPR001841 -
Trre5g02855 255 MobiDBLite consensus disorder prediction 127 151 - -
Trre5g02855 255 Pfam Ring finger domain 196 246 IPR001841 -
Trre5g02855 255 SUPERFAMILY RING/U-box 195 252 - -
Trre5g02855 255 ProSiteProfiles Zinc finger RING-type profile. 196 246 IPR001841 -
Trre5g02855 255 CDD RING-H2_PA-TM-RING 196 246 - -
Trre5g02855 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 252 IPR013083 -
Trre5g02855 255 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 118 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02855 Trre-Chr5 22732775 22733542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02855 167 250 C3H Transcription Factor Family AT1G18760 32.143 1.70e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02855 - - tpra:123904013 269.626