Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02853 ATGGTTGAAGCTTCAGGAATGAGGATGATGTTCACCAACACAACCACTCTTATTCCTGCTTTTAACCCAACTATTCACAGAACAACAACACATCTTGCTCTTTCTCAACTACCTCTCTCACGAAGAAACCACCATGTCTCTGTTGTTGTATCTGCAACTCAAACCTCAACAACATTTATGGAAACTATTCCTTGGGGTTGTGATAATGATTCACTTGATACTTCCTCTTCTCTTCAGAAATGGCTTTCTGAGTCTGGTCTTCCTTCTCAGAAGATGGCAATTGATAAAGTTGATGTTGGAGAGAGAGGACTTGTTGCTTTGAACAATATTAGAAAAGGAGAGAAGCTTCTCTTTGTTCCTCCCTCTCTTGTCATCACTCCTGATTCTGAGTGGACCTGCCCGGAAGCTGGTGAAGTATTGAAAAAGAATTCGGTGCCGGATTGGCCATTGCTTGCAACCTACCTTATAAGTGAAGCTAGCCTCATGAAATCTTCAAGATGGTTCAGTTATATATCGGCCTTACCTCGTCAACCCTACTCACTTCTTTACTGGTCACAAGCCGAACTAGATCGCTACTTGGAAGCTTCACAGATTCGGGAGAGAGCAATTGAAAGGACCGACAATGTTATTGGAACATACAATGATATGAGGACCAGAATATTTTCCAAGTACCCTGATTTCTTCCCTGAAGAGGTGTTCAACATCGAGTCCTTCAAATGGTCATTCGGCATTCTTTTCTCGCGCATGGTCCGACTACCCTCGATGGATGGAAAGGTTGCCTTGGTTCCTTGGGCAGATATGCTGAATCATAGTTGTGAGGTGGAGACATTTTTGGATTATGAAAAATCGACAAAGGGAATTGTCTTTACGACTGATCGTCCCTATCAACCAGGTGAGCAGGTGTTTATTTCATACGGAAAAAAATCAAATGGGGAACTTCTGTTATCATATGGATTTGTTCCAAAGGAGGGCACGAATCCAAGCGATTCGGTTGAGCTGTCACTGTCACTCGAGAAATCCGACGAGTCCTATAAGGAGAAGTTAGAACTGTTGAAGAAATATGGATTATCGGGATCTCAGTGTTTTCCATTAAGGGTTACTGGTTGGCCATTGGAGTTAATGGCTTATGCTTATTTAGCTGTTAGTCCTTCAAGTATGAGAGGAAAATTTGAAGAGATGGCTGCCGCCGCATCAAATAAAACTACCTCGAAGAAAGATTTCAGATATCCTGAAATAGAGGAGGAAGCATTTCAATTCATACTAGATAGTTGTGAATCTAGTATCTCAAAATACAATAAGTTCTTGCAGGTAAGTGGATCGCTAGATTTGGATGTGACTTCTCCGAAACAACTCAACCGAAGACTCTTTCTAAAGCAGCTAGCCGTGGACTTGTGTACTAGCGAACGCAGAATACTATATCGTGCTCAATATATACTGCGACGAAGACTGAGGGATATGAGGACCGGCGAATTAAAAGGCTTAACAATATTTAATGGGTTCCGAAAACTTTTCAAATGA 1518 0.417 MVEASGMRMMFTNTTTLIPAFNPTIHRTTTHLALSQLPLSRRNHHVSVVVSATQTSTTFMETIPWGCDNDSLDTSSSLQKWLSESGLPSQKMAIDKVDVGERGLVALNNIRKGEKLLFVPPSLVITPDSEWTCPEAGEVLKKNSVPDWPLLATYLISEASLMKSSRWFSYISALPRQPYSLLYWSQAELDRYLEASQIRERAIERTDNVIGTYNDMRTRIFSKYPDFFPEEVFNIESFKWSFGILFSRMVRLPSMDGKVALVPWADMLNHSCEVETFLDYEKSTKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGTNPSDSVELSLSLEKSDESYKEKLELLKKYGLSGSQCFPLRVTGWPLELMAYAYLAVSPSSMRGKFEEMAAAASNKTTSKKDFRYPEIEEEAFQFILDSCESSISKYNKFLQVSGSLDLDVTSPKQLNRRLFLKQLAVDLCTSERRILYRAQYILRRRLRDMRTGELKGLTIFNGFRKLFK 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02853 505 Gene3D - 325 489 IPR036464 -
Trre5g02853 505 PIRSF RMT_SET 7 502 IPR011192 GO:0009507|GO:0030785
Trre5g02853 505 Pfam SET domain 102 306 IPR001214 GO:0005515
Trre5g02853 505 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 57 319 - -
Trre5g02853 505 Gene3D set domain protein methyltransferase, domain 1 36 319 - -
Trre5g02853 505 ProSiteProfiles SET domain profile. 90 306 IPR001214 GO:0005515
Trre5g02853 505 CDD SET_RBCMT 85 320 IPR044431 GO:0016279|GO:0018022
Trre5g02853 505 Pfam Rubisco LSMT substrate-binding 339 472 IPR015353 -
Trre5g02853 505 SUPERFAMILY SET domain 76 323 IPR046341 -
Trre5g02853 505 FunFam Rubisco methyltransferase family protein 325 488 - -
Trre5g02853 505 SMART set_7 90 312 IPR001214 GO:0005515
Trre5g02853 505 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 68 443 - -
Trre5g02853 505 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 336 498 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02853 Trre-Chr5 22719853 22723049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02853 77 275 NAC Transcription Factor Family AT3G56570 23.039 1.60e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre5g02853 SET 9.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02853 - - cam:101500121 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02853 5 22719853 22723049 Trre5g02853 5 22719853 22723049 ECH