Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02848 ATGGGTTATATATGTGATTTTTGTGGAGACCAAAGGTCCATGGTGTACTGCCGATCCGATGCAGCATGTTTATGTTTGTCGTGTGATCGAAATGTTCATTCGGCGAATACGCTTGCTCGAAGGCATTCAAGGACACTTTTATGTGAAAGATGCAGTTCACAACCAGCTTTGGTTAGGTGTTCTGAAGAGAAAATTTCACTTTGTCAGAATTGTGATTGGTTAGGTCATGGTAGTAACTCTACATCTTCCAATCATAAGAGACAAACAATCAATTGTTATTCCGGTTGTCCTTCATCGTCGGAACTTTCTTCAATATGGTCTTTTGTGTTGGATATTCCTTCTCTGAGTGAAACTACATGTGAGCAAGAATTAGGTTTCATGAGTATTAATGAGAATAGGAGTGCTTGGGTTGATCCGAAAAACCAGAATTTGTCTGATTCAGATAAAGCTACTGATTTACCTGCTGATTCGGATAAGTCTTTCGTCGGTACATCTTCAATGCCGGAATCAAGCAAAGAACCGCCGCGTATGCTCGACCGCCCAGATGGACTGCCAAAGTTATACTGTCCTTCTACAAAATGCCCTGAAGCAAGTGAAGATGATGATGATCTGTACGGAGATTTCGATATGGATGAAATGGATATAAATATTGAGAACTATGATGAACTTTTTGGCATGGCCCTTACTCATTCTGAAGAGCTTTTTGAAAATGGTGGATTTAACAGCTTATTTGGAGCAAAGGCCATGTCTGCTGGAGATTCCAATTGTCAAGATGCTATTGCAGCTGAGGGTTCATCAATTGGACATGTGAATGCAGCACAACCAGCATGCAGCACTGCAGCATCTGCAGATTCCATATTGAGTACTAAAACTGAACCGAATCTTTGTATTACGGCGAAGCAATCCCAGTCAAGCCTTTCTTTTTCTGGTATTAATGAAGACGGTGGTGCTGGAGACTATCAAGATTGTGGAGCTTCTTCAATGCTTCTCATGGGAGAACCTCCTTGGTTAAACACTTGTCCCGAAAATGAGCTACAACTACAATCTGCTAATCGCTGTAGTGCTGTTATGCGATACAAGGAAAAGAAGAAGACTCGCAAGTTCGACAAAAGAGTGAGGTATGCCTCTCGCAAGGAAAGGGCTGATGTCCGAAGGCGTGTGAAAGGCCGGTTTGTCAAAGCTGGCGAGGCCTACGATTATGACCCTTTGAGCCAAACCAGAAGCTATTGA 1230 0.4244 MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANTLARRHSRTLLCERCSSQPALVRCSEEKISLCQNCDWLGHGSNSTSSNHKRQTINCYSGCPSSSELSSIWSFVLDIPSLSETTCEQELGFMSINENRSAWVDPKNQNLSDSDKATDLPADSDKSFVGTSSMPESSKEPPRMLDRPDGLPKLYCPSTKCPEASEDDDDLYGDFDMDEMDINIENYDELFGMALTHSEELFENGGFNSLFGAKAMSAGDSNCQDAIAAEGSSIGHVNAAQPACSTAASADSILSTKTEPNLCITAKQSQSSLSFSGINEDGGAGDYQDCGASSMLLMGEPPWLNTCPENELQLQSANRCSAVMRYKEKKKTRKFDKRVRYASRKERADVRRRVKGRFVKAGEAYDYDPLSQTRSY 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02848 409 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Trre5g02848 409 Pfam CCT motif 352 394 IPR010402 GO:0005515
Trre5g02848 409 SMART bboxneu5 48 90 IPR000315 GO:0008270
Trre5g02848 409 SMART bboxneu5 4 47 IPR000315 GO:0008270
Trre5g02848 409 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 397 - -
Trre5g02848 409 CDD Bbox1_BBX-like 47 90 - -
Trre5g02848 409 MobiDBLite consensus disorder prediction 137 182 - -
Trre5g02848 409 ProSiteProfiles CCT domain profile. 352 394 IPR010402 GO:0005515
Trre5g02848 409 CDD Bbox1_BBX-like 4 47 - -
Trre5g02848 409 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02848 Trre-Chr5 22643043 22644891 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02848 1 409 C2C2-CO-like Transcription Factor Family AT3G07650 53.810 5.93e-145 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Trre5g02848 CCT 7.4e-16 CL0281