Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02845 ATGGTTAAGGAACTGTGTTCAATTTCATCACCCAGATCACAAATCCTCAAATCCCTTCTTTGTAAGTTATCAAGAAAGACCAAAAGTGTTTCCATTGATTATTTGACACACAAAGATTTGAATCATAAAGTGTATCACAAAATGGGCCTATCAAGTCTTCCAGCACCATCTGAAGGAGTGTTATGCATAATTCTAGTAAACACTGCCATGTCAATATCAATATTCAAAGGCATTATTAGGACTATCTTACATATAATTGGTATCATTGCTTCACCATTATCTTCAACTTCCACTCCTTCACAAGATTACATCTCTCAAAACTCACCTGAGTCGTCGTCGTCATATGAATTCCATCTCAGTCCTTCTGATGATTTCATTGAAGAGTTCAGAAGCAGGACACCAACACTTAGGTTTGACACTGTGTGTAGTAGTAGCTGCTGCAAAGAACCTGAACATGATTGTTCAGTGTGTCTCACACAATTTGAACCTGAATCAGAGATAAACTACTGTTTATCTTGTGGACATGTTTTCCATAAAGTGTGTTTGGAAAAGTGGTTGGATTATTGGAACATTACATGTCCACTTTGTAGAACTCCTTTAATTCCTGAAGATGATGCAACTTGCTTATGGTAA 633 0.3681 MVKELCSISSPRSQILKSLLCKLSRKTKSVSIDYLTHKDLNHKVYHKMGLSSLPAPSEGVLCIILVNTAMSISIFKGIIRTILHIIGIIASPLSSTSTPSQDYISQNSPESSSSYEFHLSPSDDFIEEFRSRTPTLRFDTVCSSSCCKEPEHDCSVCLTQFEPESEINYCLSCGHVFHKVCLEKWLDYWNITCPLCRTPLIPEDDATCLW 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02845 210 SUPERFAMILY RING/U-box 145 203 - -
Trre5g02845 210 Pfam Ring finger domain 153 197 IPR001841 -
Trre5g02845 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 198 IPR013083 -
Trre5g02845 210 SMART ringv_2 153 197 IPR011016 GO:0008270
Trre5g02845 210 SMART ring_2 154 196 IPR001841 -
Trre5g02845 210 PANTHER - 48 205 IPR044249 -
Trre5g02845 210 ProSiteProfiles Zinc finger RING-type profile. 154 197 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02845 Trre-Chr5 22631662 22633156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02845 48 204 C3H Transcription Factor Family AT2G04240 58.491 2.07e-55 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02845 K16285 - gmx:100786803 249.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02845 5 22631662 22633156 Trre5g02845 5 22631662 22633156 ECH