Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02827 ATGGCACCAACTGTTCCCGTAGATTTTGCTGGACAAAAGGAATCCAGAAAGTACTCTCTTTCACAAATCATGGGGAAATCTCGAAAATATTCCAAAGGTTATGCTACTACTGGCTTTGTTCCTGAATTCCGTCATGTTGTAGAGACTATGGGTGAATCAGATGGGTTGGGTAGCTCGGGAAGGCTTGACATGGAGCCTGCGGCATCAGCAGATTCCTATGCCCCGAGCAAGAAAGGCGCTGGTTTGAAAAGTGATGATGGTTATGGTGGTTTTGATGTACCATTTCAAGTCTTCTTATTGTCTAAAATGTCGGCTAGGGAGAGAAAGGATTTGAAATCGAGTTTAACTTTGGAACTTGAACAAGTTAGGAAACTTCAGAAGAAAATTGACAGTATGAATTCAAACATTGTTGGATTATCTCCGTCTAGTGACATACGGAGCTGCAGTGTGGGAATGAAAAGGCCTCATCTGGAGAGCCAACACAGTATACTTCAAGCATCAGTGCCACATGGTAAGAAAAGACCCTTGCCAGGACGTAGTGGTCCCAAGACCAAAAAAGGTATGTCTGGGCGATTTGAATACCCTAAACCTGTTGCACCAATGACTACTTCATATGCTACATTGATGAAACAGTGCGAGAATTTACTTAACCGTTTGATGTCTCATCAATATGGTTGGGTTTTTAATGCACCAGTTGATATTGTTAAATTGAACATTCCGGATTATTTCACTGTCATCAAACATCCAATGGATTTGGGTACTGTTAAGAGTAAACTAACGTCTGGAAAATATTCTAGTCCTATTGCTTTTGCTGCTGATGTGAGGCTGACTTTCTCAAATGCCATGACATATAATCCACCTGGCAATGATGTACATGGCATCGCAGCAACACTTATGAAAGCCTTTGAAACAAAATGGAAGTCCATTGAGAAGAAAATTCCGAACATTGAACATCGTGTCCCATCTGAGCCTTCAAAACCTATTTGTGTAGAAACTGAAATTCCTGACCCAATTCCCCCCACAAAAAAGAAGAAAATTACACCAAATAACACTAACACTAAGCCAGAACCTGACAAAAGAATTATGAGTGACATGGAGAAGCAGAAATTGAGTCAAGAGTTGGAGGACATGCTTGGAGAGTTGCCTGAAAACATTTTGGATTTCTTGAAAGAGCAAAGTCACAATGCAGGGCAAACTAACGATGATGAAATTGAGATTGATATTGATGTTCTAAGTGATGATACCTTATTCAAATTGCGGAAGCTTCTTGATGATTTTATGGTCGAGAAGCAACGATTTCAGCCAAAAGTTGGACAGTGTGAAATGAAGCTTCTTAATGAATCAGGGTTTAGCAATTCATCAATGCAACCTTCTAAAGAGATTGAGGAGGATGTGGTTGAGGAGGATGTGGACATTGTTGGTGGGAATGATCCTCCTAATTCAAATTATCCTCCACTAGAGATTGAGAAAGATGGTGCCAACAGAAACAGTAAATGCAGCAGTTCAAGCAGCTCTAGTAGTGAATCTGGCTCGTCATCCAGTGATTCAGATTCAAGTAGTTCATCTGGTAGTGAGTTAGATACTGCTAAAGCGTCAGAACCTATTAGTTCTAAGGTGATTGGGGAAAATGTAGGACATGGCTTGACTTATGATCAAAACAGGGGGGATCTTAGTAATCCAGAAACTGGAAATGATTCAACTAACCTGGGTAGCCAGGTTGACCAGAGTTTGCAGACTAAGCCAGTTGCTATTGAATCAGAAAGCCATCAAGATGGGGAGAGTGCTGCGTCTAAGAGGCAAGTCTCTCCTGAAAAGCTCTACCGTGCAGCTTTATTAAGGAGCCGGTTTGCTGACACCATACTGAAAGCTCAAGAGAAAGCCCTTGAAAAGGATGAAAAACGTGACCCTGAAAAGCTTAGGATAGAGCGAGAAGAACTTGAGAGAAGGCAGAAGGAAGAGAAAGCTCGACTGCAAGCAGAGGCGAAGGCTGCAGAAGAGGCTCGGATGAAAGCTGAGGCAGAAGCTGCTGCTGAAGTCAAAAGGAAGAGGGAATTAGAGAGAGAAGCTGCCCGTCAGGCTTTGCAAAAGATGGAGAAAACTGTTGACATCAATGAGAGCTGCCAGTTTTTGGAAGATCTAGAGATGCTTAGTGCTGTTCATGATGAAAATACACCAAGTTTCAAAGAGGAGGCGAGTCCAGAAGATCATCAAAATGGATTTGGTGGGATCAAGCTGCAGGGAAATCCCTTAGAGCAGTTAGGATTGTACATGAAGGTTGATGATGAGGATGAGGAGGAAGAACTGCCTCAAAGTACTGCAGAGCCATCAAAAGATGTTGAAGAAGGAGAAATTGATTGA 2358 0.4207 MAPTVPVDFAGQKESRKYSLSQIMGKSRKYSKGYATTGFVPEFRHVVETMGESDGLGSSGRLDMEPAASADSYAPSKKGAGLKSDDGYGGFDVPFQVFLLSKMSARERKDLKSSLTLELEQVRKLQKKIDSMNSNIVGLSPSSDIRSCSVGMKRPHLESQHSILQASVPHGKKRPLPGRSGPKTKKGMSGRFEYPKPVAPMTTSYATLMKQCENLLNRLMSHQYGWVFNAPVDIVKLNIPDYFTVIKHPMDLGTVKSKLTSGKYSSPIAFAADVRLTFSNAMTYNPPGNDVHGIAATLMKAFETKWKSIEKKIPNIEHRVPSEPSKPICVETEIPDPIPPTKKKKITPNNTNTKPEPDKRIMSDMEKQKLSQELEDMLGELPENILDFLKEQSHNAGQTNDDEIEIDIDVLSDDTLFKLRKLLDDFMVEKQRFQPKVGQCEMKLLNESGFSNSSMQPSKEIEEDVVEEDVDIVGGNDPPNSNYPPLEIEKDGANRNSKCSSSSSSSSESGSSSSDSDSSSSSGSELDTAKASEPISSKVIGENVGHGLTYDQNRGDLSNPETGNDSTNLGSQVDQSLQTKPVAIESESHQDGESAASKRQVSPEKLYRAALLRSRFADTILKAQEKALEKDEKRDPEKLRIEREELERRQKEEKARLQAEAKAAEEARMKAEAEAAAEVKRKRELEREAARQALQKMEKTVDINESCQFLEDLEMLSAVHDENTPSFKEEASPEDHQNGFGGIKLQGNPLEQLGLYMKVDDEDEEEELPQSTAEPSKDVEEGEID 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02827 785 MobiDBLite consensus disorder prediction 720 785 - -
Trre5g02827 785 Pfam Bromodomain extra-terminal - transcription regulation 362 424 IPR027353 -
Trre5g02827 785 MobiDBLite consensus disorder prediction 326 359 - -
Trre5g02827 785 Coils Coil 108 135 - -
Trre5g02827 785 SMART bromo_6 201 311 IPR001487 GO:0005515
Trre5g02827 785 Gene3D - 355 434 IPR038336 -
Trre5g02827 785 CDD Bromo_plant1 208 306 IPR037377 -
Trre5g02827 785 Gene3D - 198 320 IPR036427 GO:0005515
Trre5g02827 785 ProSiteProfiles NET domain profile. 352 434 IPR027353 -
Trre5g02827 785 MobiDBLite consensus disorder prediction 495 531 - -
Trre5g02827 785 SUPERFAMILY Bromodomain 198 315 IPR036427 GO:0005515
Trre5g02827 785 MobiDBLite consensus disorder prediction 626 669 - -
Trre5g02827 785 MobiDBLite consensus disorder prediction 720 735 - -
Trre5g02827 785 MobiDBLite consensus disorder prediction 471 604 - -
Trre5g02827 785 Pfam Bromodomain 212 295 IPR001487 GO:0005515
Trre5g02827 785 Coils Coil 641 700 - -
Trre5g02827 785 ProSiteProfiles Bromodomain profile. 220 292 IPR001487 GO:0005515
Trre5g02827 785 MobiDBLite consensus disorder prediction 552 585 - -
Trre5g02827 785 PRINTS Bromodomain signature 223 236 IPR001487 GO:0005515
Trre5g02827 785 PRINTS Bromodomain signature 273 292 IPR001487 GO:0005515
Trre5g02827 785 PRINTS Bromodomain signature 239 255 IPR001487 GO:0005515
Trre5g02827 785 PRINTS Bromodomain signature 255 273 IPR001487 GO:0005515
Trre5g02827 785 PANTHER TRANSCRIPTION FACTOR GTE8 101 770 - -
Trre5g02827 785 MobiDBLite consensus disorder prediction 51 79 - -
Trre5g02827 785 MobiDBLite consensus disorder prediction 167 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02827 Trre-Chr5 22535585 22540135 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02827 - - gmx:100776368 1012.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02827 5 22535585 22540135 Trre5g02827 5 22535585 22540135 ECH
Trre9g03075 9 39140626 39142968 Trre5g02827 5 22535585 22540135 PCT