Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02817 ATGGCCCCTTCTGAATCAAACGCCGACGTATTCCCATGGCTGAAATCCATGCCGGTAGCCCCCGAATACCGACCTACTCCGGCTGAATTCGAAGATCCGATCGGTTACATTTTCAAGATCGAAAAAGAAGCATCCAAATACGGTATCTGTAAAATCATTCCACCCTTTCCACCTTCACCTAAGAAAACCGCTATTGCTAACCTAAACAGGTCACTTCACAATTCCACATTCACTACACGTCAGCAACAGATCGGGTTCTGTCCCCGTAAGTCCCGACCCGTTAAACGACCCGTTTGGCAGAGTGGGGACCACTACACCTTTTCCGAGTTCGAAGCTAAAGCCAAATGGTTCGAGAAAAGTTACCTCAAGAAGCATAATGGTAGTAGTGCTCTTGAAATTGAGACACTCTTTTGGAAAGCAACGGTTGATAAACCTTTTTCAGTTGAATATGCAAATGATATGCCAGGTTCTGCATTTTCGATGTCGTCGACGAAATGTCGTCATTCCGGTGAGGCTGCTTCGGTTGCTCATAGTGCTTGGAATATGAGAGGGGTTTCAAGGGCAAAAGGGTCTTTGTTGAGGTTTATGAAGGAGGAAATTCCTGGTGTTACTTCACCTATGGTTTATCTTGCTATGCTTTTTAGTTGGTTTGCTTGGCATGTTGAAGATCATGATCTTCATAGCTTGAATTATCTTCATATGGGTGCTTCCAAGACTTGGTATGGTGTTCCTAGAGATGCTGCTGTTGCTTTTGAAGATGTTGTTAGGGTTCATGGCTATGGTGGAGAGATTAACCCTCTTGTTACATTTTCTATTCTTGGTGAGAAAACCACAGTGATGTCACCAGAAGTGTTTATTAGTGCAGGTGTTCCATGCTGCAGGTTAGTGCAAAATGCTGGAGAATTTGTTGTGACATTTCCAAGAGCCTATCACACAGGGTTTAGTCATGGTTTTAATTGTGGAGAGGCAGCAAACATTGCAACACCTGAGTGGTTGAGGGTTGCTAAAGATGCTGCTATTCGGAGGGCTTCAATAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCAAGAGTCCCTGGGGGAATCAGTGCGGGACCACGGAGTTCTCGTCTTAAAGATAAGAAGAAGGGTGAAGGAGACTCTGTAGTTAAAGAACTATTTGTCCAAGACGTGTTACGAAACAATGATCTGCTTCATGTACTTGGAAAAGAATCTTCTGTAGTACTTCTTCCTCGCAGTTCAGTTGACATTTCTATTTGCTCAAAATTACGGGTTGGATGTCAGCAACAAAAAGTGATCCCTGGATTTTCCATTAATGTATGCAATTCTGAGGGAATGAATTCCTCAAAAGGTTTTGTTTCTGATGATCTGGTATTCAACAGGAATTGCGGAATCGTCCAGGAAAAAAATTCCCATTCTGTGAAAGACGAGTTTACTCTATTGTGCGAAGGGAAGGGGACTTCCCCATTTGATGCAAACAGTAACACATCCCCTTCAAGTTCCAAGCAGCTTCATAGAGGCAACGAAAGTGTAACTAGTCAAGGAGATGGATTGTCAGATCAGAGACTGTTTTCGTGTGTCACGTGTGGGCTATTAAACTTTTCATGTGTTGCTATTGTACGTCCTAGCAAACCAGCAGCTAGATATCTTATGTCTGCTGATTGTAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGAGTACCTAGCAATAAATTTACTGTTGCCGGTGAAGATGAAAATATTCCTGAGCCAAATATTCATACAGCGGGGACAAAGAAAAATGCCCAAGTAGAGGCTTTAAATACTGAAGGAGGAAATGGCAATACAGCTCTTGCATTATTGGCTTCAGCATATGGAAATTCTTCTGATTCTGAGGAAGATGCAGTTGATGATCATGAATCAAATGCAATAAACTCTACATCAGAAAGTTTGCCTTCTAATGTTCAGGTTTCCCATGATAATCCCATGACTAGGCCTGATAAAGATGATATTCTTTCAGAGAGTACCAGTTACGAAGCACATAGATTTGAGGGTAATTTTAGTCAGCCTTGTGACCAATCTTTGGAGGATCAGGATTATAAAATCACTTCAGGAGTTGCATTTGAAAATACAAGGGGAATGTCTTATTCCACCACATATAGTTCCCAAGATGCTAATAATGCTGAAAAATCACTGTCAGTCAAAGCCATGGATGCTGTCAATCATAAAAATGCTTTATTGGTACCGCAATGTGATGAAGACTCATCTAGAATGCATGTATTCTGTCTAGAGCATGCCGTGGAAGCAGAGCAGCAACTTCGGCCAATAGGTGGAGCCCACATATTGCTCTTGTGCCATCCAGATTATCCCAAGATAGAGGCTGAAGCAAAGTTGGTGGCAGAAGATTTGGGGATTGATTACATGTGGAAGAATATTGCCTACAGGCATGGCACCAAAGAGGATGAGGAGAGGATCCAGTTGGCGGTGGATAGTGAGGAAGCGATTCCCGGGAATGGGGACTGGGCTGTAAAGCTAGGAATAAATCTCTTTTATAGTGCAAATCTTAGCCGCTCTCCCCTTTATAGCAAGCAGATGCCTTACAATTCTGTTATATATTATGCATTTGGTCGTAGCTCTCAAGCAAGCCCACCCATAAAACCAAAGGTCTATCAGAGAAGGTCTGACAAGCAGAAAAAGGTAGTTGCTGGCAAATGGTGTGGTAAAGTTTGGATGTCTAATCAGGTCCATCCCCTTTTAGCAAAAAGGGATTCTGAATATGTTGAGGATGAAAAAAGTTTACACGGATTGGTATTGCCTAATGTTAAACTTGAGGCATCTGGAAGTACCCCCAAAACTGAAACTGCTATTAAAAAATCAGGTAGGAAAAGGAAAACGGCCTTAGGCAGTAAACGAACCAGGAGAGGAAGATTTATTGAAAAAGATGCGGTTTTAGATAATTCTGCTGAAGATAAACCCAATCCTCGGCCAAGGAGGGTTCTTAAGCAAGCTAGGGGTGTTGAGAAAGATGATGCAGCTGAAAGTGATGCAGTTTCTGATGATTCGATTGATGATGATTATCGCATGCGACGTATGAGTTTTAATGTCAAAAAAGCTAAATTTATTGACAATAATGCGGTATCAGGTGACGCAGTGGACTATGATTCTGATTGTCATCAGATGGGAGAACCTGGAAGCAAGCACATTGAATATACAGAGAGAGACTCAATTTCAGAGGATTCTTTGGATGTTGGTTCACTTCAACACAGAAAGACTTCTAGAAACAAGCATGCCAACTTCACCAGTGAAGAAGATGCAATTTCTGATGGCCAAATGGAGAATGGTTGTCAGATGCAGCAAAAGAGAATTCCTAAAAGCAGGCAAGGCAAATCCCTTGCTGAAAACGATTCAGTGATATCAGATGACCAACTGGAGCCGAACATGCAGAAGCAGCGGCGGACTAATTCTAGAAGTAGGGAAGCCAAATACCGCGCCGAAGAGGATATTGTATCAGATAACCAAATGAATGTCTACTGTCGCAAGTACCAAAAAAGGACAGTTAAAGTCAGGCAAGCCAGATGTGTAGCAAGGGAAGATTTAATGTTTGATGACCAATTGGAGGATCCCTTTCTAAACCAGAAACCAAGTATTTCTAGAAGGAAAAACAAAGGCATTGATAGAGAAGTTAAAAATGAAATGTCTGATGACCAACTGGATGATCACTTTCAGAAGCAGCAGAGAAAAATTCCTAAGAGCAGGAGGCACACCAAACAGACTGATGAAGATGTTATTGATGACTCGGCTGAAGATGATATGAGTTTAGATAATGAAATGGAAGATGATTCTCTTCAGCAGTACAAGAGAACTCAAGCAACTAAACAATCCAAACCAAAGACACTTAGACAAATGAAGCAATCCAAATCCCCCCAGATAAAAAACCAGACACCTAAGCCAGGGAAACGAGGGGTTGGGCTGCGGATGAAATCAAAGGCTGCTCAGCAACTAAAGCAGTCTTCTTGTTTGCGGAGTAAACAATCTGGTAGCTCCAGAGAGCCTAGTCTAGATATGGAAGAGGAGGAAGAAGGTGGACCTAGCACACGCCTTAGAAAGAGAGTCCAAAAAACTCAGGAGTCTGAAGTAAAATCAAAAGACAAGCAAATCAAAAGGAAAAGGGCAAATGATGTTACAGCTACAAAGGTTTCAGCTCGTGATCCCAAAACAGAGGACGAAGGAGCAGAATATCAGTGTGACATTGAGGGATGCACCATGAGTTTTGAATCAAAACAAGAATTGTTGCACCATAAGAGAAATGTCTGTCCAGTAAAAGGTTGTGGCAAAAAGTTTTTCTCACACAAATATCTAGTGCAGCACCGGCGAGTTCATGAAGATGACCGCCCCCTGAAGTGCCCCTGGAAGGGGTGCAAGATGTCTTTCAAGTGGGCATGGGCTCGAACCGAGCATATTCGAGTCCACACTGGTGCACGTCCTTATGCGTGTGCCGAACCAGGTTGTGGGCAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGGCATTTAACAAAGAAGAGTCGTCAATAG 4599 0.4238 MAPSESNADVFPWLKSMPVAPEYRPTPAEFEDPIGYIFKIEKEASKYGICKIIPPFPPSPKKTAIANLNRSLHNSTFTTRQQQIGFCPRKSRPVKRPVWQSGDHYTFSEFEAKAKWFEKSYLKKHNGSSALEIETLFWKATVDKPFSVEYANDMPGSAFSMSSTKCRHSGEAASVAHSAWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYLAMLFSWFAWHVEDHDLHSLNYLHMGASKTWYGVPRDAAVAFEDVVRVHGYGGEINPLVTFSILGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRVPGGISAGPRSSRLKDKKKGEGDSVVKELFVQDVLRNNDLLHVLGKESSVVLLPRSSVDISICSKLRVGCQQQKVIPGFSINVCNSEGMNSSKGFVSDDLVFNRNCGIVQEKNSHSVKDEFTLLCEGKGTSPFDANSNTSPSSSKQLHRGNESVTSQGDGLSDQRLFSCVTCGLLNFSCVAIVRPSKPAARYLMSADCSFFNDWVVGSGVPSNKFTVAGEDENIPEPNIHTAGTKKNAQVEALNTEGGNGNTALALLASAYGNSSDSEEDAVDDHESNAINSTSESLPSNVQVSHDNPMTRPDKDDILSESTSYEAHRFEGNFSQPCDQSLEDQDYKITSGVAFENTRGMSYSTTYSSQDANNAEKSLSVKAMDAVNHKNALLVPQCDEDSSRMHVFCLEHAVEAEQQLRPIGGAHILLLCHPDYPKIEAEAKLVAEDLGIDYMWKNIAYRHGTKEDEERIQLAVDSEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYYAFGRSSQASPPIKPKVYQRRSDKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEYVEDEKSLHGLVLPNVKLEASGSTPKTETAIKKSGRKRKTALGSKRTRRGRFIEKDAVLDNSAEDKPNPRPRRVLKQARGVEKDDAAESDAVSDDSIDDDYRMRRMSFNVKKAKFIDNNAVSGDAVDYDSDCHQMGEPGSKHIEYTERDSISEDSLDVGSLQHRKTSRNKHANFTSEEDAISDGQMENGCQMQQKRIPKSRQGKSLAENDSVISDDQLEPNMQKQRRTNSRSREAKYRAEEDIVSDNQMNVYCRKYQKRTVKVRQARCVAREDLMFDDQLEDPFLNQKPSISRRKNKGIDREVKNEMSDDQLDDHFQKQQRKIPKSRRHTKQTDEDVIDDSAEDDMSLDNEMEDDSLQQYKRTQATKQSKPKTLRQMKQSKSPQIKNQTPKPGKRGVGLRMKSKAAQQLKQSSCLRSKQSGSSREPSLDMEEEEEGGPSTRLRKRVQKTQESEVKSKDKQIKRKRANDVTATKVSARDPKTEDEGAEYQCDIEGCTMSFESKQELLHHKRNVCPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMSFKWAWARTEHIRVHTGARPYACAEPGCGQTFRFVSDFSRHKRKTGHLTKKSRQ 1532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02817 1532 MobiDBLite consensus disorder prediction 1221 1248 - -
Trre5g02817 1532 ProSiteProfiles JmjC domain profile. 174 343 IPR003347 -
Trre5g02817 1532 ProSiteProfiles Zinc finger C2H2 type domain profile. 1439 1468 IPR013087 -
Trre5g02817 1532 ProSitePatterns Zinc finger C2H2 type domain signature. 1471 1493 IPR013087 -
Trre5g02817 1532 MobiDBLite consensus disorder prediction 500 527 - -
Trre5g02817 1532 PANTHER LYSINE-SPECIFIC DEMETHYLASE 12 1465 - -
Trre5g02817 1532 ProSiteProfiles Zinc finger C2H2 type domain profile. 1469 1498 IPR013087 -
Trre5g02817 1532 SMART cupin_9 174 343 IPR003347 -
Trre5g02817 1532 MobiDBLite consensus disorder prediction 1291 1317 - -
Trre5g02817 1532 SUPERFAMILY beta-beta-alpha zinc fingers 1455 1497 IPR036236 -
Trre5g02817 1532 SUPERFAMILY beta-beta-alpha zinc fingers 1487 1521 IPR036236 -
Trre5g02817 1532 SMART c2h2final6 1469 1493 IPR013087 -
Trre5g02817 1532 SMART c2h2final6 1439 1463 IPR013087 -
Trre5g02817 1532 SMART c2h2final6 1416 1438 IPR013087 -
Trre5g02817 1532 SMART c2h2final6 1499 1525 IPR013087 -
Trre5g02817 1532 Gene3D Cupin 13 347 - -
Trre5g02817 1532 ProSiteProfiles Zinc finger C2H2 type domain profile. 1499 1530 IPR013087 -
Trre5g02817 1532 SUPERFAMILY Clavaminate synthase-like 188 357 - -
Trre5g02817 1532 FunFam Probable lysine-specific demethylase ELF6 1466 1495 - -
Trre5g02817 1532 SMART JmjN_1 19 60 IPR003349 -
Trre5g02817 1532 MobiDBLite consensus disorder prediction 631 673 - -
Trre5g02817 1532 MobiDBLite consensus disorder prediction 1333 1352 - -
Trre5g02817 1532 Pfam JmjC domain, hydroxylase 207 325 IPR003347 -
Trre5g02817 1532 Gene3D Classic Zinc Finger 1437 1523 - -
Trre5g02817 1532 ProSitePatterns Zinc finger C2H2 type domain signature. 1501 1525 IPR013087 -
Trre5g02817 1532 FunFam Probable lysine-specific demethylase ELF6 1496 1525 - -
Trre5g02817 1532 MobiDBLite consensus disorder prediction 1291 1408 - -
Trre5g02817 1532 MobiDBLite consensus disorder prediction 1090 1105 - -
Trre5g02817 1532 MobiDBLite consensus disorder prediction 1148 1166 - -
Trre5g02817 1532 ProSitePatterns Zinc finger C2H2 type domain signature. 1441 1463 IPR013087 -
Trre5g02817 1532 MobiDBLite consensus disorder prediction 1090 1166 - -
Trre5g02817 1532 MobiDBLite consensus disorder prediction 975 1015 - -
Trre5g02817 1532 Pfam jmjN domain 21 54 IPR003349 -
Trre5g02817 1532 ProSiteProfiles JmjN domain profile. 20 61 IPR003349 -
Trre5g02817 1532 MobiDBLite consensus disorder prediction 644 664 - -
Trre5g02817 1532 MobiDBLite consensus disorder prediction 1362 1408 - -
Trre5g02817 1532 MobiDBLite consensus disorder prediction 1106 1147 - -
Trre5g02817 1532 MobiDBLite consensus disorder prediction 950 1022 - -
Trre5g02817 1532 MobiDBLite consensus disorder prediction 1217 1275 - -
Trre5g02817 1532 FunFam Probable lysine-specific demethylase ELF6 13 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02817 Trre-Chr5 22441516 22449962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02817 1365 1530 C2H2 Transcription Factor Family AT3G48430 64.045 1.20e-69 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre5g02817 JmjC 9.2e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02817 - - psat:127084261 2552.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02817 5 22441516 22449962 Trre5g02817 5 22441516 22449962 ECH