Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02810 ATGATGGATGGGCGGCGACATTCTGTTGATATACCGATTTCTAAGACTCTTGTAGCATTGAGGAGAGTGAGGTCATTGAGGGATCCATCAACTAATTCTATGACCAAACATTCTCCTTTGATTGACAATTTACATTGGGAAAATGGTTCCGGCAATGGGATTTCTCTCATGTTTCCTAATGATGATGATGATGTTCATGCTTTTGATTCTGATGATAACCTTGCCTTCAGATCAAGTAATTTATGTTTTAAGGGTCAAAGAGACCTGAATGCTGCTGGTTTTGAATCGAATCATGGTATGTTGAATTCACGGCTGAATCAACGAGGCGTTTATGGAAATAAATCACCTAGTGAAAGCTGTGGTAGCAACCATGGTGGTAGAGGATTGGATATTAACGATTTCAAGGACGAGGAATTATGCTATAGAAAAACTGGAAGATCGTCTAAATTAGGGAGAATTGATCATATTAAGTTTGCCAAAAAACCAACTGTTATGGCTGGAGATATCGTTAGCCATTTGGGTAGTCCGTGTCTTTCTCCTCGTGATGTTTTATCGCCCCATGGTTCCTTTGAGAATATAAATCATGATTTTGGTGTTCTAAATAATAGTTGTAATGCATGTGGAATAAACTGTTGTTGGTCAAAATCACCGAGATTTAGAGAATCAAATCTTTATTGTGAGAAAGAAGACCGTCCCTTGATATTAAACGGTGCTGATGACACGAATCTTCATGGACATAGAAATGTGAGACACAATAGTGGCGAAATTAGTCCAAATTTGGAAACTCCTAGAATGTTATCCATGAAATTCAGGCCTAAATCATTTGGTGATTTGGTGGGACAAGATGTGGTAGTTAGGTCTCTTTTGAATGCAATCTCTAGTGGAAGGATAACATCATTTTATCTCTTCCATGGTCCGCACGGTACCGGCAAGACATCTGCTTCTAGAATATTTGCTTCTGCTCTGAACTGCCTCTCTGTTGAGGAGCAAAGACCATGTGGTTTGTGTAGAGAATGTGCTTTATTTTTTTCTGGAAGAAGTAAAGATGTTAAGGTGGTGGATTCTGTGAGAATCAATCATACAGACCAGGTTAAATCTCTCGTTAAGAATGCGTGTACACCTCCAGTTTCGTCGCGTTTTAAGGTTTTCATTATTGATGAGTGCCAGTTATTGAACGAGGAGACGTGGGCGTGCCTTTCAAATAACCTAGAGAACATTTCTCAACATGCAGTCTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCTCAAAGTGCAGTTTCCCGTGCACAGAAGTATTACTTTCCGAAGGTTAAAGACGCTGATATTGCAAGCAGATTGGAAACAATTTGTGCAGAAGAAGGTCTTGATTATGAGCAGGATGCTTTGGACCTAATTGCCATAAAATCCTGTGGTTCTGTTAGGGATGCAGAAATTATGCTTGATCAGCTTAGTTTGCTCGGTAAAAAGATCAAAATTTCCTTTGTTTACGAGCTTACTGGGATTGTTTCCGATGATGAATTGCTTGATTTGCTGGATCTGGCGATGTCCCCAGACACGACAAATACAGTTATAAGAGCTCGTGAGCTGATGAGATCGAGGGTAGATCCTTTGCAACTTGTGTCACAGTTGGCAAATCTCATAATGGACATCCTTGCGGGGAAATGTGATTATGAAGCCAGAAGTAGATTTTTTAGTAGATATACTTCCGAAGCAGACCTTCAGAAACTAAGTCATGCATTGAGAATACTTTCTGAAGCCGAGAAACAATTACGAATCTCGAAAAATCAAACAACATGGTTCACTGTAGCTCTTCTACAGTTAAGCTCTATTGGTTATCCTTCCACCGATGCAGATGGTACCAAGTCGTTTCTGAGAAGTGCGTGCAATGGAGGGCAGAGCATGGAACGTCGTGCTACAGGTGGTTGTGAAAACAAGTCATTTAGATTAGTGGCGCACGAGGATCACGAAGGAACACTGGATTCCATATGGTATAAAGCTACTGGGATATGTCAATCTAGTCGACTCAAAACTTTTCTCAGGAAGAAGGGAAAGTTGTCTTCGCTTCATGTTGATCAATCTACATCTTGTCTTGCTATAGCGGAGTTGGAATTCAGCCATCGCCGCCATGTATCCAAAGCTGAGAAGTCGTGGAAATTGATTGCAAGTTCCTTGCAAAGCATATTGGGTTGTAACATTGAGTTGAGAATCACTTATGTACCTCGTACTTCTAACTCACCGAAGAGGTTATCTTTCAACATCTTCAGTTGTTCGCGCAAAATACAACAGAAACCATTGTCGTCCAATGATCAAGAAAGTGAAATAGACTATGCTTATGACACTTCTGAAAATCCCATGATGAAAAATAAAACTCTATCTTCTTCTGCTGACTGTGGATCTCGGATGCCACCATCGAAGTCTTACAACAAAATGGATGTCGTAACAACACTGAGGAGTTGTGAAGGGAACTTGCTCAGCTCAAGAGAAAGGTTTTTGAATCGGTTTCTTCAAAAGAATATGGGAGCATCGTGTTCTAGAGTCGATGATTCTTACAATGAAGAGGGACACATTGGTGCACATTTAGTTCCATCAAAAATCAACTCAGATAATCAGTCTAACTGTTTTCCTCAAACTCTCTGGCTTCAAAAGAAGCTCCGATCATCAAAGTCGTCCAAGTTTTCTTTTCAAGATATTTAA 2697 0.4012 MMDGRRHSVDIPISKTLVALRRVRSLRDPSTNSMTKHSPLIDNLHWENGSGNGISLMFPNDDDDVHAFDSDDNLAFRSSNLCFKGQRDLNAAGFESNHGMLNSRLNQRGVYGNKSPSESCGSNHGGRGLDINDFKDEELCYRKTGRSSKLGRIDHIKFAKKPTVMAGDIVSHLGSPCLSPRDVLSPHGSFENINHDFGVLNNSCNACGINCCWSKSPRFRESNLYCEKEDRPLILNGADDTNLHGHRNVRHNSGEISPNLETPRMLSMKFRPKSFGDLVGQDVVVRSLLNAISSGRITSFYLFHGPHGTGKTSASRIFASALNCLSVEEQRPCGLCRECALFFSGRSKDVKVVDSVRINHTDQVKSLVKNACTPPVSSRFKVFIIDECQLLNEETWACLSNNLENISQHAVFVMITPDLDKLPQSAVSRAQKYYFPKVKDADIASRLETICAEEGLDYEQDALDLIAIKSCGSVRDAEIMLDQLSLLGKKIKISFVYELTGIVSDDELLDLLDLAMSPDTTNTVIRARELMRSRVDPLQLVSQLANLIMDILAGKCDYEARSRFFSRYTSEADLQKLSHALRILSEAEKQLRISKNQTTWFTVALLQLSSIGYPSTDADGTKSFLRSACNGGQSMERRATGGCENKSFRLVAHEDHEGTLDSIWYKATGICQSSRLKTFLRKKGKLSSLHVDQSTSCLAIAELEFSHRRHVSKAEKSWKLIASSLQSILGCNIELRITYVPRTSNSPKRLSFNIFSCSRKIQQKPLSSNDQESEIDYAYDTSENPMMKNKTLSSSADCGSRMPPSKSYNKMDVVTTLRSCEGNLLSSRERFLNRFLQKNMGASCSRVDDSYNEEGHIGAHLVPSKINSDNQSNCFPQTLWLQKKLRSSKSSKFSFQDI 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02810 898 CDD HLD_clamp_pol_III_gamma_tau 438 501 IPR045085 -
Trre5g02810 898 Pfam DNA polymerase III, delta subunit 281 438 - -
Trre5g02810 898 Gene3D - 439 501 - -
Trre5g02810 898 NCBIfam DNA polymerase III subunit gamma/tau 265 608 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Trre5g02810 898 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 265 487 IPR027417 -
Trre5g02810 898 Gene3D - 502 611 - -
Trre5g02810 898 SUPERFAMILY post-AAA+ oligomerization domain-like 502 611 IPR008921 GO:0003677|GO:0006260
Trre5g02810 898 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 267 699 - -
Trre5g02810 898 Gene3D - 259 436 IPR027417 -
Trre5g02810 898 FunFam DNA polymerase III subunit gamma/tau 439 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02810 Trre-Chr5 22382825 22386036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02810 256 503 Core DNA Replication Machinery Family AT1G21690 27.381 8.92e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02810 - - tpra:123897029 1618.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02810 5 22382825 22386036 Trre5g02810 5 22382825 22386036 ECH
Trre15g02996 15 26952869 26957305 Trre5g02810 5 22382825 22386036 PCT