LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g02810	ATGATGGATGGGCGGCGACATTCTGTTGATATACCGATTTCTAAGACTCTTGTAGCATTGAGGAGAGTGAGGTCATTGAGGGATCCATCAACTAATTCTATGACCAAACATTCTCCTTTGATTGACAATTTACATTGGGAAAATGGTTCCGGCAATGGGATTTCTCTCATGTTTCCTAATGATGATGATGATGTTCATGCTTTTGATTCTGATGATAACCTTGCCTTCAGATCAAGTAATTTATGTTTTAAGGGTCAAAGAGACCTGAATGCTGCTGGTTTTGAATCGAATCATGGTATGTTGAATTCACGGCTGAATCAACGAGGCGTTTATGGAAATAAATCACCTAGTGAAAGCTGTGGTAGCAACCATGGTGGTAGAGGATTGGATATTAACGATTTCAAGGACGAGGAATTATGCTATAGAAAAACTGGAAGATCGTCTAAATTAGGGAGAATTGATCATATTAAGTTTGCCAAAAAACCAACTGTTATGGCTGGAGATATCGTTAGCCATTTGGGTAGTCCGTGTCTTTCTCCTCGTGATGTTTTATCGCCCCATGGTTCCTTTGAGAATATAAATCATGATTTTGGTGTTCTAAATAATAGTTGTAATGCATGTGGAATAAACTGTTGTTGGTCAAAATCACCGAGATTTAGAGAATCAAATCTTTATTGTGAGAAAGAAGACCGTCCCTTGATATTAAACGGTGCTGATGACACGAATCTTCATGGACATAGAAATGTGAGACACAATAGTGGCGAAATTAGTCCAAATTTGGAAACTCCTAGAATGTTATCCATGAAATTCAGGCCTAAATCATTTGGTGATTTGGTGGGACAAGATGTGGTAGTTAGGTCTCTTTTGAATGCAATCTCTAGTGGAAGGATAACATCATTTTATCTCTTCCATGGTCCGCACGGTACCGGCAAGACATCTGCTTCTAGAATATTTGCTTCTGCTCTGAACTGCCTCTCTGTTGAGGAGCAAAGACCATGTGGTTTGTGTAGAGAATGTGCTTTATTTTTTTCTGGAAGAAGTAAAGATGTTAAGGTGGTGGATTCTGTGAGAATCAATCATACAGACCAGGTTAAATCTCTCGTTAAGAATGCGTGTACACCTCCAGTTTCGTCGCGTTTTAAGGTTTTCATTATTGATGAGTGCCAGTTATTGAACGAGGAGACGTGGGCGTGCCTTTCAAATAACCTAGAGAACATTTCTCAACATGCAGTCTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCTCAAAGTGCAGTTTCCCGTGCACAGAAGTATTACTTTCCGAAGGTTAAAGACGCTGATATTGCAAGCAGATTGGAAACAATTTGTGCAGAAGAAGGTCTTGATTATGAGCAGGATGCTTTGGACCTAATTGCCATAAAATCCTGTGGTTCTGTTAGGGATGCAGAAATTATGCTTGATCAGCTTAGTTTGCTCGGTAAAAAGATCAAAATTTCCTTTGTTTACGAGCTTACTGGGATTGTTTCCGATGATGAATTGCTTGATTTGCTGGATCTGGCGATGTCCCCAGACACGACAAATACAGTTATAAGAGCTCGTGAGCTGATGAGATCGAGGGTAGATCCTTTGCAACTTGTGTCACAGTTGGCAAATCTCATAATGGACATCCTTGCGGGGAAATGTGATTATGAAGCCAGAAGTAGATTTTTTAGTAGATATACTTCCGAAGCAGACCTTCAGAAACTAAGTCATGCATTGAGAATACTTTCTGAAGCCGAGAAACAATTACGAATCTCGAAAAATCAAACAACATGGTTCACTGTAGCTCTTCTACAGTTAAGCTCTATTGGTTATCCTTCCACCGATGCAGATGGTACCAAGTCGTTTCTGAGAAGTGCGTGCAATGGAGGGCAGAGCATGGAACGTCGTGCTACAGGTGGTTGTGAAAACAAGTCATTTAGATTAGTGGCGCACGAGGATCACGAAGGAACACTGGATTCCATATGGTATAAAGCTACTGGGATATGTCAATCTAGTCGACTCAAAACTTTTCTCAGGAAGAAGGGAAAGTTGTCTTCGCTTCATGTTGATCAATCTACATCTTGTCTTGCTATAGCGGAGTTGGAATTCAGCCATCGCCGCCATGTATCCAAAGCTGAGAAGTCGTGGAAATTGATTGCAAGTTCCTTGCAAAGCATATTGGGTTGTAACATTGAGTTGAGAATCACTTATGTACCTCGTACTTCTAACTCACCGAAGAGGTTATCTTTCAACATCTTCAGTTGTTCGCGCAAAATACAACAGAAACCATTGTCGTCCAATGATCAAGAAAGTGAAATAGACTATGCTTATGACACTTCTGAAAATCCCATGATGAAAAATAAAACTCTATCTTCTTCTGCTGACTGTGGATCTCGGATGCCACCATCGAAGTCTTACAACAAAATGGATGTCGTAACAACACTGAGGAGTTGTGAAGGGAACTTGCTCAGCTCAAGAGAAAGGTTTTTGAATCGGTTTCTTCAAAAGAATATGGGAGCATCGTGTTCTAGAGTCGATGATTCTTACAATGAAGAGGGACACATTGGTGCACATTTAGTTCCATCAAAAATCAACTCAGATAATCAGTCTAACTGTTTTCCTCAAACTCTCTGGCTTCAAAAGAAGCTCCGATCATCAAAGTCGTCCAAGTTTTCTTTTCAAGATATTTAA	2697	0.4012	MMDGRRHSVDIPISKTLVALRRVRSLRDPSTNSMTKHSPLIDNLHWENGSGNGISLMFPNDDDDVHAFDSDDNLAFRSSNLCFKGQRDLNAAGFESNHGMLNSRLNQRGVYGNKSPSESCGSNHGGRGLDINDFKDEELCYRKTGRSSKLGRIDHIKFAKKPTVMAGDIVSHLGSPCLSPRDVLSPHGSFENINHDFGVLNNSCNACGINCCWSKSPRFRESNLYCEKEDRPLILNGADDTNLHGHRNVRHNSGEISPNLETPRMLSMKFRPKSFGDLVGQDVVVRSLLNAISSGRITSFYLFHGPHGTGKTSASRIFASALNCLSVEEQRPCGLCRECALFFSGRSKDVKVVDSVRINHTDQVKSLVKNACTPPVSSRFKVFIIDECQLLNEETWACLSNNLENISQHAVFVMITPDLDKLPQSAVSRAQKYYFPKVKDADIASRLETICAEEGLDYEQDALDLIAIKSCGSVRDAEIMLDQLSLLGKKIKISFVYELTGIVSDDELLDLLDLAMSPDTTNTVIRARELMRSRVDPLQLVSQLANLIMDILAGKCDYEARSRFFSRYTSEADLQKLSHALRILSEAEKQLRISKNQTTWFTVALLQLSSIGYPSTDADGTKSFLRSACNGGQSMERRATGGCENKSFRLVAHEDHEGTLDSIWYKATGICQSSRLKTFLRKKGKLSSLHVDQSTSCLAIAELEFSHRRHVSKAEKSWKLIASSLQSILGCNIELRITYVPRTSNSPKRLSFNIFSCSRKIQQKPLSSNDQESEIDYAYDTSENPMMKNKTLSSSADCGSRMPPSKSYNKMDVVTTLRSCEGNLLSSRERFLNRFLQKNMGASCSRVDDSYNEEGHIGAHLVPSKINSDNQSNCFPQTLWLQKKLRSSKSSKFSFQDI	898

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g02810	898	CDD	HLD_clamp_pol_III_gamma_tau	438	501	IPR045085	-
	Trre5g02810	898	Pfam	DNA polymerase III, delta subunit	281	438	-	-
	Trre5g02810	898	Gene3D	-	439	501	-	-
	Trre5g02810	898	NCBIfam	DNA polymerase III subunit gamma/tau	265	608	IPR012763	GO:0003887\|GO:0005524\|GO:0006260\|GO:0009360
	Trre5g02810	898	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	265	487	IPR027417	-
	Trre5g02810	898	Gene3D	-	502	611	-	-
	Trre5g02810	898	SUPERFAMILY	post-AAA+ oligomerization domain-like	502	611	IPR008921	GO:0003677\|GO:0006260
	Trre5g02810	898	PANTHER	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	267	699	-	-
	Trre5g02810	898	Gene3D	-	259	436	IPR027417	-
	Trre5g02810	898	FunFam	DNA polymerase III subunit gamma/tau	439	501	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g02810	Trre-Chr5	22382825	22386036	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre5g02810	256	503	Core DNA Replication Machinery Family	AT1G21690	27.381	8.92e-16	77.8

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g02810	-		-	tpra:123897029	1618.98

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre5g02810	5	22382825	22386036	Trre5g02810	5	22382825	22386036	ECH
	Trre15g02996	15	26952869	26957305	Trre5g02810	5	22382825	22386036	PCT

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