Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02805 ATGACAAACACACTTTTCACTTTGGTTTTATTTCTCTTCTCTCTTTTCTTGCCTACTCTCATTTCCTCTTCACCTCTTCAAAACCCTGAATTGGTGGTCCAAGAAGTTAACAGGAAAATCAATGCCTCGGTAGCAAGAAGGAATTTAGGATACCTGTCTTGTGGGAGTGGAAATCCGATTGACGATTGTTGGAGGTGCGACTCGAATTGGGAGAAGAATAGACAAAGGCTAGCAGATTGTGCAATTGGGTTCGGGAAGAACGCCATTGGTGGAAAAAACGGTAAAATCTACATTGTAAACGATGCCAATGATGACAATCCGGTGAACCCAAAGCCTGGAACACTCCGCCACGCTGTGATCCAAGTGGAACCATTATGGATAATCTTCGCGAGAGACATGGTGATCAAGTTAAAAGAAGAATTAATCATGAATTCTTTCAAAACAATTGACGGTAGAGGCGCGAGTGTGCACATTGCTGGTGGTCCATGCATTACCATACAATATGTCACCAATATTATCATCCATGGAATAAATATACATGATTGTAAACAAGGTGGGAATGCTATGGTAAGGGACTCCCCGCGACATTTCGGGTGGAGGACTATATCGGACGGTGATGGTGTGTCAATTTTTGGTGGAAGTCATGTTTGGGTTGATCATTGTTCTTTGTCTAATTGTAAAGATGGTTTGATTGATGCTATTCATGGATCCACGGCTATAACAATCTCTAACAATTACATGACACACCATGATAAAGTCATGTTGTTGGGTCATAGTGATTCTTATACTCAAGATAAGAATATGCAAGTCACAATTGCTTTTAACCACTTTGGTGAAGGTCTTGTTCAAAGGATGCCAAGGTGTAGGCTTGGATATTTCCATGTAGTGAACAATGATTACACTCACTGGGAAATGTATGCTATTGGAGGAAGTGCTAATCCAACCATCAACAGTCAAGGAAACAGATTTGTTGCTCCTGATAACAGATTCAGCAAAGAGGTGACAAAGTATGAAGATGCAGCTGAGAGTAAATGGAAGCATTGGAATTGGAGATCAGAAGGAGACTTAATGGTAAATGGTGCATTTTTTACTGCATCAGGTGGTGGAGCTTCATCTAGCTATGCAAGAGCTTCAAGCTTAAGTGCAAGACCATCTTCCCTTGTCGGTTCCATAACAATAGCAGCTGGTACACTTAATTGTAAGAAAGGCTCTCCTTGCTAG 1221 0.412 MTNTLFTLVLFLFSLFLPTLISSSPLQNPELVVQEVNRKINASVARRNLGYLSCGSGNPIDDCWRCDSNWEKNRQRLADCAIGFGKNAIGGKNGKIYIVNDANDDNPVNPKPGTLRHAVIQVEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNAMVRDSPRHFGWRTISDGDGVSIFGGSHVWVDHCSLSNCKDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDNRFSKEVTKYEDAAESKWKHWNWRSEGDLMVNGAFFTASGGGASSSYARASSLSARPSSLVGSITIAAGTLNCKKGSPC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02805 406 SUPERFAMILY Pectin lyase-like 36 382 IPR011050 -
Trre5g02805 406 SMART amb_all 132 329 IPR002022 -
Trre5g02805 406 Gene3D - 57 399 IPR012334 -
Trre5g02805 406 FunFam Pectate lyase 57 399 - -
Trre5g02805 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Trre5g02805 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Trre5g02805 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Trre5g02805 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Trre5g02805 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Trre5g02805 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Trre5g02805 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Trre5g02805 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Trre5g02805 406 PANTHER PECTATE LYASE 18-RELATED 26 404 IPR045032 GO:0030570
Trre5g02805 406 Pfam Pectate lyase 139 323 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02805 Trre-Chr5 22325055 22327983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02805 6 406 Polysaccharide Lyase AT5G63180 78.908 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02805 K01728 - gmx:100779940 710.294