Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02790 ATGTCTATCACTTCCACTACCACTCCTCTCTTCAAATCCCTTACCATGGCAGCCGAAACATCATCCCGCCTCTTCTCTTCACCCTCCTCCCTCTTCTACCCCAAAACCAAACCTACTTTCTTCAAACTTCCCTCTCTCAAACTTAATCTCTCCCTCAAAACTAACCGCTCTCTCGCTCCTCCCTTGTTCGTCGCTCAAGAAGGCGACACCCTAACCACTTCACCAGACGAACCTGGACTTCTCGATTGGGAACCCACTGCCGAAACTGAGGAAACCGCTGCTGCTGATGAAGATTCTTCCGAAGGAGATTTCGTTGAACCACCTGAAGATGCTAAATTGTTTGTTGGAAATTTGCCTTATAATGTTGATAGTGAGAAATTAGCATTGCTTTTTGGACAGGCTGGTACCGTTGAGATTGCTGAGGTTATTTATAACAGGGATACCGACACGAGTCGCGGATTTGGATTTGTAACCATGAGTACTGTTGAAGAAGCCGAGTCTGCTGTCGAGAAATTTAACCGCTATGATTATGATGGAAGAGCGTTGACTGTTAATGTAGCTTCTCCAAGAGGATCTCGGCCTGAGCGTGTTGAGCGTCAACCTCGTTCATTTGAACCTGCCTTGAGAGTTTATGTTGGTAACTTGGCATGGGAAGTTGATGATGCTAGGCTTGAACAAATTTTCAGTGAACATGGTAAGGTTCTCAATGCTCGAGTAATCTATGAGAGGGAGACTGGTCGATCACGTGGCTTTGGCTTTGTCACATTCTCTGATGAGACGGAAATGAATGATGCCATTGCTGCTCTTGATGGTCAGAGTTTGGAGGGTAGGACAATAAGAGTGAGTGTTGCTGAAGACAGGCCCAGGCGTAACTCATTTTGA 882 0.4603 MSITSTTTPLFKSLTMAAETSSRLFSSPSSLFYPKTKPTFFKLPSLKLNLSLKTNRSLAPPLFVAQEGDTLTTSPDEPGLLDWEPTAETEETAAADEDSSEGDFVEPPEDAKLFVGNLPYNVDSEKLALLFGQAGTVEIAEVIYNRDTDTSRGFGFVTMSTVEEAESAVEKFNRYDYDGRALTVNVASPRGSRPERVERQPRSFEPALRVYVGNLAWEVDDARLEQIFSEHGKVLNARVIYERETGRSRGFGFVTFSDETEMNDAIAALDGQSLEGRTIRVSVAEDRPRRNSF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02790 293 FunFam 31 kDa ribonucleoprotein, chloroplastic 198 292 - -
Trre5g02790 293 PANTHER OS02G0815200 PROTEIN 21 288 - -
Trre5g02790 293 CDD RRM2_NsCP33_like 209 284 - -
Trre5g02790 293 Gene3D - 197 292 IPR012677 -
Trre5g02790 293 Gene3D - 70 196 IPR012677 -
Trre5g02790 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 280 IPR000504 GO:0003723
Trre5g02790 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 182 IPR000504 GO:0003723
Trre5g02790 293 SMART rrm1_1 209 282 IPR000504 GO:0003723
Trre5g02790 293 SMART rrm1_1 112 185 IPR000504 GO:0003723
Trre5g02790 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Trre5g02790 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 286 IPR000504 GO:0003723
Trre5g02790 293 SUPERFAMILY RNA-binding domain, RBD 201 291 IPR035979 GO:0003676
Trre5g02790 293 SUPERFAMILY RNA-binding domain, RBD 107 202 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02790 Trre-Chr5 22229709 22231970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02790 113 290 Eukaryotic Initiation Factors Gene Family AT3G16380 36.170 1.64e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02790 - - tpra:123897635 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02969 15 26524466 26526090 Trre5g02790 5 22229709 22231970 ECH
Trre5g02790 5 22229709 22231970 Trre5g02790 5 22229709 22231970 ECH
Trre15g02969 15 26524466 26526090 Trre5g02790 5 22229709 22231970 PCT