Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02756 ATGAGTTCTCCTAGTCCTATGGAGACGGAGCAAAACCCTACCACCGATCAAAACGGCGCCGCTTCACAACACTCACCTCCACCTCCTCCTCCTCCTCTTCCGCCGGAGGATAAAGTTCTTGTCCCTATTGAGGTTTGCTTAAAACCTTCCAGCACAGCTTCCATCCACGATGTCCGTTCAGCAGTTGAGGGGATGCTTGAAAAGAGGAGTTTGAGCTATAATGGTGGACCAATTCCCATTCCCCTTGATGAACCTTTTCTTACTGATTACGTGCAAAGAATTTGTGTATGTGATACAGGTGAAGGGATGCAAAATGACAATGTTCTTTTGTTCTGGCAAGTCAAGCCTGTTGTACATGTCTTTCAGCTTAGTGAGGAAGGACCGTGTGAGGATATCAGCTCTGATGGCCAGTCTTCTAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCCTGATATATGAATCTGGTCTAAAGCAAAGGTTGTTGCGGTATGCAGCGAGTGCTTTGCTCTTCACTGAAAAGGCTGTTGATCCATTCCTTGTTTCATGGAACCGCATAATTCTTTTACACGGACCCCCTGGGACTGGAAAGACGTCCTTATGTAAAGCATTAGCTCAGAAACTATCAATTCGATTCAATTCAAGATACCCACAGGCCCAGCTTGTTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCCGAAAGCGGCAAGCTGGTAGCAAAACTTTTCCAGAAGATTCAAGAAATGGTTGAGGAAGAAAGCAATTTGGTATTTGTTTTGATCGATGAAGTCGAAAGCCTTGCTGCTGCTAGAAAAGCTGCTTTGTCCGGTTCTGAACCTTCGGATTCCATTAGGGTTGTCAATGCATTACTAACTCAGATGGATAAGTTGAAATCATCTCCAAATGTGATCATTCTAACCACATCCAACATTACTGCTGCTATCGATATTGCTTTTGTTGATCGAGCTGATATCAAAGCATATGTTGGTCCACCAACACTTCAAGCTCGGTATGAAATATTGAGGTCTTGCTTGCAGGAACTCATGCGTTCAGGGATATTAACTAGTTTTGAGGATTGTAAGAATATCGTGCTTCCAAATTATGCTAGTGCAAAACAGAGGATGAACACACCAGATTTTCATGAGCCTACTACATCCACGCAACTGTGCAAGCAACTAGTTGAAACTGCAGAGGCATGTGAGGGTATGAGCGGAAGGTCTCTCAGAAAGCTTCCATTTTTGGCACATGCTGCACTTACAAATCCTTTTGATTGCAACCCTATCAAGTTCTTATGTACAATGATAGAAACTGCAAAGAGGGAGCGTTCCGAGCTTCCTGATTAA 1371 0.434 MSSPSPMETEQNPTTDQNGAASQHSPPPPPPPLPPEDKVLVPIEVCLKPSSTASIHDVRSAVEGMLEKRSLSYNGGPIPIPLDEPFLTDYVQRICVCDTGEGMQNDNVLLFWQVKPVVHVFQLSEEGPCEDISSDGQSSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKAVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNSRYPQAQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELMRSGILTSFEDCKNIVLPNYASAKQRMNTPDFHEPTTSTQLCKQLVETAEACEGMSGRSLRKLPFLAHAALTNPFDCNPIKFLCTMIETAKRERSELPD 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02756 456 MobiDBLite consensus disorder prediction 23 38 - -
Trre5g02756 456 FunFam pachytene checkpoint protein 2 homolog 134 356 - -
Trre5g02756 456 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 34 453 IPR044539 -
Trre5g02756 456 CDD RecA-like_Pch2-like 140 338 - -
Trre5g02756 456 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 194 212 IPR001270 GO:0005524
Trre5g02756 456 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 308 322 IPR001270 GO:0005524
Trre5g02756 456 MobiDBLite consensus disorder prediction 1 22 - -
Trre5g02756 456 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 423 IPR027417 -
Trre5g02756 456 Pfam ATPase family associated with various cellular activities (AAA) 194 339 IPR003959 GO:0005524|GO:0016887
Trre5g02756 456 SMART AAA_5 190 342 IPR003593 GO:0016887
Trre5g02756 456 ProSitePatterns AAA-protein family signature. 312 331 IPR003960 GO:0005524|GO:0016887
Trre5g02756 456 Gene3D - 133 357 IPR027417 -
Trre5g02756 456 MobiDBLite consensus disorder prediction 1 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02756 Trre-Chr5 21972967 21978523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02756 194 360 Calmodulin-binding Proteins AT3G56690 30.178 3.17e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02756 K22399 - gmx:100795009 792.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02756 5 21972967 21978523 Trre5g02756 5 21972967 21978523 ECH