Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02748 ATGATGGAATTGAATAGAGCTCTAGAGAATCGTAGTTTAGCAGTTTCCACGGTCCAAGAAAAGGGTCGTTCTCTTTTTACTAATAGGGATTTCTACCCAGGGGAAGTGATTATTAGCCAAGAGCCATATGTTTGTGTTCCAACCCACAAAAGGTGTGATGGATGTTTAGCAACAACTAACCTTAGCAAGTGTTCACGTTGTCAACTTGTTTGGTATTGTGGAACACCATGTCAGAAATCAGAGTGGAAGAAGTTGCAAGATGAGAAGATCATTCCAACCACTGCTATGGACAACTACAAGTTAGTGGAGGCATTAGTGGCTCACATGTCTGACATCAAAGAGGAGCAGCTGGTGTTGTATGCACAGATGGCTAATCTTGTACACTTAATACTACAGTGGCCCGAAATCAATATAAAAGAGATTGCAGAAATTTTTTCCAAGTTTGCATGTAATGCGCATACCATTTGTGACAGTGAGTTGAGACCTTTGGGAACAGGATTGTATCCTGTTGTTTCCGTTATCAATCACAGCTGCTTGCCCAATTCAGTGTTGGTTTTTGAAGGAACGGTAGCATCAGTACGTGCTTTGCAACATGTACCCAAAGGGACTGAGGTATTGATAAGTTATATAGAGACAGCTGGAAGCACCGTGACTCGACAAAAGGCTCTCAAAGGGCAGTACTTATTCACTTGTGTTTGTTCCCGCTGTTCAAAAGTGGGTCAGTATGAAGATGTTCAAGAAAATGCAATTCTAGAAGGATATAGATGCAAAAATGAAATATGTGATGGTTTCTTGCTCCGCACAACTGACGGAAAAGCATTTCAATGCGAAGAATGTGGGTTAGTTAGAGACAAGGAAGAGATAAAGCAAATTGCAACTGAAATTAAATTGCTATCAGAAGAAGCTTCTAAGCCTTCTTCCAGTGACGATTATCAAGATGCTATTTCCATATATAAAATGATTGAGAAACTGCAAACAAAACTATATCATCCTTTCTCAATCAATTTGATGCAAACACGAGACAATTTTGAAGCTTTAGCATATTGCAAATTGACCATACCAATCTATCGAAGAGTGTATCCTGCTGTTCACCCTCTGCTTGGATTGCAGCATTATACTTGTGGAAAACTTGAATGGTATCTCGGAGACACAGATGAAGCTGTTAAATCATTGACGAAAGCTGTGGATATACTAAGGATTACTCATGGCACAAATACTCCTTTTCTGAAAGAACTCTTGATGATGTTGGAGGAAGCTCGTGCAGAAGCGTCTTTCAAATTGTCGTCGAAAGAGGAGTGGAATACAAGTTAA 1311 0.3982 MMELNRALENRSLAVSTVQEKGRSLFTNRDFYPGEVIISQEPYVCVPTHKRCDGCLATTNLSKCSRCQLVWYCGTPCQKSEWKKLQDEKIIPTTAMDNYKLVEALVAHMSDIKEEQLVLYAQMANLVHLILQWPEINIKEIAEIFSKFACNAHTICDSELRPLGTGLYPVVSVINHSCLPNSVLVFEGTVASVRALQHVPKGTEVLISYIETAGSTVTRQKALKGQYLFTCVCSRCSKVGQYEDVQENAILEGYRCKNEICDGFLLRTTDGKAFQCEECGLVRDKEEIKQIATEIKLLSEEASKPSSSDDYQDAISIYKMIEKLQTKLYHPFSINLMQTRDNFEALAYCKLTIPIYRRVYPAVHPLLGLQHYTCGKLEWYLGDTDEAVKSLTKAVDILRITHGTNTPFLKELLMMLEEARAEASFKLSSKEEWNTS 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02748 436 Pfam SET domain 22 209 IPR001214 GO:0005515
Trre5g02748 436 ProSiteProfiles SET domain profile. 11 210 IPR001214 GO:0005515
Trre5g02748 436 Pfam MYND finger 52 84 IPR002893 -
Trre5g02748 436 Gene3D SET domain 127 209 IPR046341 -
Trre5g02748 436 SMART set_7 11 216 IPR001214 GO:0005515
Trre5g02748 436 Gene3D - 46 88 - -
Trre5g02748 436 Gene3D Tetratricopeptide repeat domain 214 434 IPR011990 GO:0005515
Trre5g02748 436 ProSiteProfiles Zinc finger MYND-type profile. 52 89 IPR002893 -
Trre5g02748 436 Coils Coil 281 301 - -
Trre5g02748 436 SUPERFAMILY TPR-like 307 402 IPR011990 GO:0005515
Trre5g02748 436 SUPERFAMILY SET domain 12 209 IPR046341 -
Trre5g02748 436 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 13 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02748 Trre-Chr5 21934967 21939649 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre5g02748 SET 8.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02748 K11426 - gmx:100789518 674.085