Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02745 ATGGAATCTAAACCCTTGAACGCTATTAAGATCCTCTATAGCTACGGTGGCAAGATCCTTCCTCGTTCCACTGACGGTGAACTCCGTTACGTCGGCGGTCACACCAGAGTTCTCTCCGTTGATCGTTCAATTTCATTTTCAGAATTGATGGTGAAACTCGAAGAATTGTGTGGTTCATCTGCGAAGTTAAGATGTCAATTACCAAACGGAGACATGGAAACGTTGATCTCCATCACCAACGACGAAGATTTAGCTAATATAATCAATGAATACGAACGTGTCTCATTGAAATTAACTCATCCGTTGAAGATCAGAGCCATTCTTTCGCAACCGAAATCGCTCGTGAAAATTTCTTCTGATCCGTCATCTGCTTCATCCAGTGCCAGTCGTTCTCCTTCCAGATCGCCTCATACCTCCGCTGAATCGCTGCCGTACGCGGTGGCGTATCGTATCGGACGACACAGTCGCTCGCCGCGTGCGCCGTTCGGTTATTCGTTCGGCGTCAAGAATGGATCGGCGAAAGCTTGTTGCAATATGGGCCAGTTCGGTGGAAGCCCAAGGTCCTTGTATTATGGGCCTCGTTGCAATAATTACTGCCATTAA 603 0.4726 MESKPLNAIKILYSYGGKILPRSTDGELRYVGGHTRVLSVDRSISFSELMVKLEELCGSSAKLRCQLPNGDMETLISITNDEDLANIINEYERVSLKLTHPLKIRAILSQPKSLVKISSDPSSASSSASRSPSRSPHTSAESLPYAVAYRIGRHSRSPRAPFGYSFGVKNGSAKACCNMGQFGGSPRSLYYGPRCNNYCH 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02745 200 Gene3D - 29 110 - -
Trre5g02745 200 SUPERFAMILY CAD & PB1 domains 25 113 - -
Trre5g02745 200 PANTHER OS05G0427100 PROTEIN-RELATED 3 134 - -
Trre5g02745 200 SMART PB1_new 23 102 IPR000270 GO:0005515
Trre5g02745 200 Pfam PB1 domain 26 97 IPR000270 GO:0005515
Trre5g02745 200 CDD PB1_UP2 14 108 - -
Trre5g02745 200 MobiDBLite consensus disorder prediction 116 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02745 Trre-Chr5 21929381 21930077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02745 9 94 MAP Kinase Kinase Kinase AT5G57610 47.674 9.10e-24 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02745 - - vra:106761207 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g02745 5 21929381 21930077 Trre5g02745 5 21929381 21930077 ECH
Trre15g02923 15 25650818 25651646 Trre5g02745 5 21929381 21930077 PCT