Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g02732 ATGGGAGACATCCCCACATTCTTGATAATAATATTAGATGCAAGAAGGTATAAGAACAGCTTCAAAAGGTACTTTCCTTTTACTATAATAATTCTTCTGATCAAAGAAACCTCTACATATATCACAAACAGCTCGGGAGAAACTATGGCATCATCAAGCTCATACAATTCACCATGTGCAGCCTGCAAATTCCTTCGTCGAAAATGCATGCCAGGTTGCATTTTCGCGCCATACTTTCCACCAGAAGAGCCGCAAAAATTCGCAAACGTTCACAAGATCTTTGGCGCAAGCAACGTGACAAAGATCCTCAACGAACTCCTCCCTCACCAGAGAGAAGATGCAGTGAATTCACTTGCTTATGAAGCGGAAGCGCGCGTGAGGGATCCGGTTTACGGATGTGTTGGTGCTATCTCTTTCCTTCAGAGACAAGTTCAAAGGCTTCAAAAAGAACTCGATTCTGCTAACGCTGATCTTCTTCGCTTTGCTTACAGTGATTCATCTCTTCCACCTCTTCCTCCTCTTGTTGTTCCGGCTTCATTTCATCATCATCATCATCATCAACAATTAACACCTCAGAGACAATTACAATTTAGTTCAAGATTTGGTAATGGTGGTAATGTTGATGCAAGTGGTTTTTACTCTTTTCCTTATGCTATTCCATGGAATGATACCTCTTCTGATGATTTAAGTGGAGGTGTAGGAGGAAGAGGAGGAGGTGTATGA 723 0.4177 MGDIPTFLIIILDARRYKNSFKRYFPFTIIILLIKETSTYITNSSGETMASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKILNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDSANADLLRFAYSDSSLPPLPPLVVPASFHHHHHHQQLTPQRQLQFSSRFGNGGNVDASGFYSFPYAIPWNDTSSDDLSGGVGGRGGGV 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g02732 240 ProSiteProfiles LOB domain profile. 57 158 IPR004883 -
Trre5g02732 240 Pfam Lateral organ boundaries (LOB) domain 58 155 IPR004883 -
Trre5g02732 240 Coils Coil 137 157 - -
Trre5g02732 240 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 56 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g02732 Trre-Chr5 21738094 21740182 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g02732 49 167 AS2 family AT5G63090 89.167 2.40e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre5g02732 LOB 4.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g02732 - - gmx:100803667 270.396